Evidence map›Paper›PMID 41454803›Full record

ArticleProtein science : a publication of the Protein Society2026

Molecular mechanistic insights into the OX40-OX40L complex from biophysical and computational analyses.

Hiro Nishimuta, Akinobu Senoo, Keisuke Kasahara, Taito Kubo, Saeko Yanaka, Satoru Nagatoishi, Takanori So, Tadashi Ueda, Kouhei Tsumoto, Jose M M Caaveiro

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Hiro NishimutaDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.
Akinobu SenooDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.ORCID https://orcid.org/0000-0001-6911-360X
Keisuke KasaharaDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.
Taito KuboDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.
Saeko YanakaDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.ORCID https://orcid.org/0000-0002-3513-5701
Satoru NagatoishiMedical Device Development and Regulation Research Center, School of Engineering, The University of Tokyo, Tokyo, Japan.
Takanori SoLaboratory of Molecular Cell Biology, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, Toyama, Japan.
Tadashi UedaLaboratory of Protein Structure, Function and Design, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.ORCID https://orcid.org/0000-0002-4555-2445
Kouhei TsumotoDepartment of Chemistry and Biotechnology, Graduate School of Engineering, The University of Tokyo, Tokyo, Japan.
Jose M M CaaveiroDepartment of Protein Drug Discovery, Graduate School of Pharmaceutical Sciences, Kyushu University, Fukuoka City, Japan.ORCID https://orcid.org/0000-0001-5568-2369

Funding

Japan Agency for Medical Research and Development 23ak0101209h0001Japan Agency for Medical Research and Development JP24ama121033Japan Agency for Medical Research and Development JP25ama121031Japan Society for the Promotion of Science 24K18262Japan Society for the Promotion of Science JP22H02755Japan Society for the Promotion of Science JP23K24018
6 · The paper itself

Abstract

OX40 and OX40L belong to the tumor necrosis factor receptor superfamily (TNFRSF) and tumor necrosis factor superfamily (TNFSF), respectively. Protein-protein interactions between OX40 and OX40L facilitate T cell responses, triggering various immunological and pathophysiological events. Excessive activation frequently contributes to the onset of autoimmune and allergic diseases. Therefore, the OX40/OX40L system is considered a promising target for drug discovery. Given that the structure of the OX40-OX40L complex exhibits some unique features compared to other members of these protein super families, it is reasonable to assume that this tandem possesses distinct interaction mechanisms. However, detailed interaction analysis using quantitative parameters such as binding kinetics or thermodynamics, with remains to be performed for OX40/OX40L. In this study, we identified several hot spot residues from the OX40 cysteine-rich domains (CRDs) 1 to 3 by alanine scanning. Kinetic and thermodynamic analysis combined with molecular dynamics simulations highlighted the characteristics of a hot spot from CRD3 due to its indirect influence on those from CRD1 and CRD2, providing insights into the interaction mechanism and a strategy for drug discovery targeting this interaction.

Indexed as

OX40 LigandReceptors, OX40HumansMolecular Dynamics SimulationProtein BindingThermodynamicsOX40 LigandReceptors, OX40TNFRSF4 protein, humanTNFSF4 protein, humanalanine scanninghot spot residuesinflammationinteraction analysisMD simulationsOX40OX40Lprotein–protein interactionTNFRSFTNFSF

Identifiers

PMID41454803
PMCPMC12743370

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.