Evidence map›Paper›PMID 41460113›Full record

ArticleJournal of chemical information and modeling2026

HydroNanoConstruct: A Web Application for Digital Construction, Crystal Growth Investigation, and Atomistic Descriptor Calculation of Hydrated Metal Oxide Nanoparticles Powered by the EosCloud Platform.

Panagiotis D Kolokathis, Anastasios Sourpis, Dimitris Mintis, Andreas Tsoumanis, Georgia Melagraki, Milica Velimirovic, Iseult Lynch, Antreas Afantitis

Abstract read
In one paragraph

Article in Journal of chemical information and modeling, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Panagiotis D KolokathisNovaMechanics MIKE, Piraeus 18545, Greece.
Anastasios SourpisEntelos Institute, Larnaca 6059, Cyprus.
Dimitris MintisEntelos Institute, Larnaca 6059, Cyprus.ORCID 0000-0003-3002-951X
Andreas TsoumanisEntelos Institute, Larnaca 6059, Cyprus.
Georgia MelagrakiDivision of Physical Sciences and Applications, Hellenic Military Academy, Vari 16672, Greece.
Milica VelimirovicFlemish Institute for Technological Research (VITO), Mol 2400, Belgium.
Iseult LynchEntelos Institute, Larnaca 6059, Cyprus.ORCID 0000-0003-4250-4584
Antreas AfantitisEntelos Institute, Larnaca 6059, Cyprus.ORCID 0000-0002-0977-8180

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

HydroNanoConstruct is a web application with a graphical user interface (GUI) that enables the digital construction and analysis of hydrated metal/metalloid oxide (ΜΟ) nanoparticles (NPs). The tool supports (a) building hydrated ΜΟ NPs from crystallographic information files (CIFs) of MOs by adding hydrogen cations, hydroxyl anions, and water molecules to the surface atoms, preserving the bulk material's coordination numbers for the metal/metalloid atoms, (b) performing energy minimization on the digitally constructed hydrated MO NPs to obtain realistic structures, (c) embedding the hydrated MO NP into a simulation box filled with water molecules to incorporate solvent effects, and (d) running multiple molecular dynamics and energy minimization cycles to compute atomistic descriptors, including surface energy (in vacuum and in water) and the potential energy of the bulk material. The tool is freely available via the EosCloud Platform at https://eoscloud.entelos.eu/ssbd4chem/nanoconstruct/.

Indexed as

InternetMetal NanoparticlesOxidesSoftwareWaterCrystallizationMolecular Dynamics SimulationOxidesWater

Identifiers

PMID41460113
PMCPMC12801294

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.