Evidence map›Paper›PMID 41482685›Full record

Trial reportClinical infectious diseases : an official publication of the Infectious Diseases Society of America2026

Regional Variations of Rates and Determinants of Drug Resistance Mutations in People Failing First-line Therapy for HIV-1: A Substudy from the D2EFT Phase 3b/4 Clinical Trial.

Billal Musah Obeng, Jolie Hutchinson, Ansari Shaik, Ploenchan Chetchotisakd, Iskandar Azwa, Wahyu Nawang Wulan, Nagalingeswaran Kumarasamy, Marcelo Wolff, José Bruguera, Marcelo Losso and 13 more

Abstract readClinical Trial, Phase IIIRandomized Controlled Trial
In one paragraph

Trial report in Clinical infectious diseases : an official publication of the Infectious Diseases Society of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

23 authors.

Billal Musah ObengThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.ORCID 0000-0002-1158-7922
Jolie HutchinsonThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.
Ansari ShaikThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.
Ploenchan ChetchotisakdSrinagarind Hospital, Khon Kaen University, Khon Kaen, Thailand.ORCID 0000-0001-9501-5827
Iskandar AzwaInfectious Disease Unit, Faculty of Medicine, Universiti Malaya, Kuala Lumpur, Malaysia.
Wahyu Nawang WulanReference laboratory, Indonesia Research Partnership on Infectious Diseases (INA-RESPOND), Jakarta, Indonesia.ORCID 0000-0001-6920-7235
Nagalingeswaran KumarasamyVHS Infectious Diseases Medical Centre, CART-Clinical Research Site Chennai, Chennai, India.ORCID 0009-0006-2252-5731
Marcelo WolffFundacion Arriaran, Hospital San Borja Arriarán, Santiago, Chile.
José BrugueraEmerging Diseases Research Unit, Hospital J.M. Ramos Mejía, Buenos Aires, Argentina.
Marcelo LossoEmerging Diseases Research Unit, Hospital J.M. Ramos Mejía, Buenos Aires, Argentina.
Richard KaplanDepartment of Medicine, Desmond Tutu Health Foundation, Cape Town, South Africa.ORCID 0000-0003-1565-4704
Mariama Sadjo DialloFaculty of Health Sciences and Techniques, Gamal Abdel Nasser University and Donka Hospital, Guinea.
Nnakelu EriobuInternational Research Center of Excellence, Institute of Human Virology Nigeria, Abuja, Nigeria.ORCID 0000-0003-2528-8082
Godfrey MusoroClinical Research Centre, University of Zimbabwe, Harare, Zimbabwe.
July KumalawatiDepartment of Pathology, Dr Cipto Mangunkusumo Hospital, Jakarta, Indonesia.ORCID 0000-0001-9736-0608
Abba BadamasiDepartment of Family Medicine, National Hospital Abuja, Abuja, Nigeria.
Munawaroh FitriahFaculty of Medicine, Dr Soetomo Hospital, Surabaya, Indonesia.
Deshinta Putri MulyaDepartment of Internal Medicine, Dr Sardjito Hospital, Yogyakarta, Indonesia.
Matthew LawThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.
Gail MatthewsThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.ORCID 0000-0002-1048-6396
Francesca Di GiallonardoThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.
Anthony Dominic KelleherThe Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia.ORCID 0000-0002-0009-3337
Dolutegravir and Darunavir Evaluation in Adults Failing Therapy (D2EFT) Study Group

Funding

Genomics Health Futures Mission-Pathogens Genomics Grant Opportunity FSPGN000047Harvard UniversityIndian Council of Medical ResearchMassachusetts General HospitalMedical Research Future FundThe Foundation for AIDS ResearchTREAT AsiaUnitaidUniversity International Postgraduate RSRE7061University of New South WalesWHO
6 · The paper itself

Abstract

backgroundD²EFT (Dolutegravir and Darunavir Evaluation in Adults Failing Therapy) was a phase 3b/4 randomized clinical trial designed to assess second-line treatment options systematically. This substudy evaluated the distribution of drug resistance mutations (DRMs) before treatment randomization in individuals failing first-line therapy.

methodsFrom a total of 826 participants across 14 countries, 727 sequences that covered the PR-RT-INT (700), PR-RT (24), and RT (3) regions were analyzed for drug resistance. Sequences were submitted to the Stanford HIV drug resistance database to detect DRMs and assign subtypes. By adjusting for country and antiretroviral therapy regimen, we assessed the association between DRMs and country and reported DRMs.

resultsSubtype C of human immunodeficiency virus type 1 (HIV-1) accounted for most (59.3%) infections. There were extraordinarily high rates of high-level resistance to lamivudine and emtricitabine (both at 88.3%) and for efavirenz and nevirapine (92.8% and 96.8%, respectively). On average, nucleoside reverse transcriptase inhibitor mutations had the highest occurrence across countries with M184V/I detected in 86.2% of the samples, while the highest proportion of nonnucleoside reverse transcriptase inhibitor mutations was K103N at 57.8%. K103N had an increased likelihood of occurrence in African and South American countries (P < .05). Participants with prior exposure to a zidovudine-containing regimen had an increased likelihood of T215F/Y mutations (6.80 [2.59-17.86]), while those with nevirapine/rilpivirine exposure had a decreased likelihood of K103N mutations (0.29 [0.15-0.56]).

conclusionsThe regional specificity of mutations underscores the dynamic nature of HIV-1 drug resistance patterns and the importance of monitoring and understanding local mutation profiles.

Indexed as

Anti-HIV AgentsDrug Resistance, ViralHIV-1HIV InfectionsAdultDarunavirFemaleHumansMaleMiddle AgedMutationTreatment FailureAnti-HIV AgentsDarunavirdrug resistance mutationsHIV-1HIV-1 subtypeslow- and middle-income countries

Identifiers

PMID41482685
PMCPMC13131943

What Socratic holds

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LicenceCC BY-NC-ND
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.