Evidence map›Paper›PMID 41490886›Full record

ArticleNature communications2026

Measuring and locating the changes in protein structure using MELO.

Lingyan Zheng, Yang Liao, Yintao Zhang, Mingxuan Liu, Mingkun Lu, Tingting Fu, Shuiyang Shi, Xiuna Sun, Chengbin Gu, Huaicheng Sun and 3 more

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors.

Lingyan Zheng *Department of Pharmacy, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China.ORCID http://orcid.org/0000-0001-7533-2649
Yang Liao *College of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.
Yintao Zhang *College of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-5263-3438
Mingxuan LiuChu Kochen Honors College, Zhejiang University, Hangzhou, China.
Mingkun LuCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0003-1522-6320
Tingting FuCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.
Shuiyang ShiCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.
Xiuna SunCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.
Chengbin GuZhejiang University-University of Edinburgh Institute, Zhejiang University, Hangzhou, China.
Huaicheng SunCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0002-1381-9571
Minjie MouCollege of Pharmaceutical Sciences, State Key Laboratory of Advanced Drug Delivery and Release Systems, Zhejiang University, Hangzhou, China.ORCID http://orcid.org/0000-0001-7619-2975
Haibin DaiDepartment of Pharmacy, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. haibindai@zju.edu.cn.ORCID http://orcid.org/0000-0002-5768-2714
Feng ZhuDepartment of Pharmacy, Second Affiliated Hospital, Zhejiang University School of Medicine, Hangzhou, China. zhufeng@zju.edu.cn.ORCID http://orcid.org/0000-0001-8069-0053

Funding

National Natural Science Foundation of China (National Science Foundation of China) 82373790Natural Science Foundation of Zhejiang Province (Zhejiang Provincial Natural Science Foundation) RG25H300001
6 · The paper itself

Abstract

Understanding the impact that subtle variations (missense mutation, environmental change, ion chelation, ligand binding, etc.) have on protein structure helps to reveal their biological effects, but remain extremely challenging due to the difficulty in measuring and locating the changes in protein structure. Herein, a method entitled MELO is therefore constructed, which enable a systematic measurement based on residues' geometric characteristics & relative distance and a high-throughput location of structural change based on secondary structure variation & protein segment shift. Our method performs best in capturing the structure changes of various degrees of magnitude (some increases were >30%) and is capable of precisely locating the regions of alterations for critical case studies. Moreover, it identifies over 10,000 structural changes induced by subtle variation that existing methods fail to detect. An online server allows users to upload their structures for comparison, and all those structural changes identified in this study have also been made available for download.

Indexed as

ProteinsSoftwareHumansModels, MolecularProtein ConformationProtein Structure, SecondaryProteins

Identifiers

PMID41490886
PMCPMC12876843

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.