Evidence map›Paper›PMID 41511814›Full record

ReviewBriefings in functional genomics2026

Bioinformatics insights into plant genomic imprinting: approaches, challenges, and future perspectives.

Xiaotong Jing, Xi Su, Quan Zou, Mengting Niu

Abstract readReview
In one paragraph

Review in Briefings in functional genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Xiaotong JingInstitute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, China.ORCID 0009-0002-8003-7403
Xi SuThe Affiliated Foshan Women and Children Hospital, Guangdong Medical University, No. 11 Renminxi Road, Chancheng District, Foshan 528000, China.
Quan ZouInstitute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, China.ORCID 0000-0001-6406-1142
Mengting NiuInstitute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, No. 2006 Xiyuan Avenue, West Hi-Tech Zone, Chengdu 611731, China.ORCID 0000-0001-9175-4649

Funding

Foshan Birth Defects Prevention and Control Engineering Technology Research Center 2420001000293Key Science and Technology Research Project of Foshan 2120001008276Municipal Government of Quzhou 2024D042National Natural Science Foundation of China 32270786National Natural Science Foundation of China 62402088National Natural Science Foundation of China 62425107National Natural Science Foundation of China 62473268Shenzhen Science and Technology Program RCBS20231211090800004
6 · The paper itself

Abstract

Genomic imprinting is an epigenetic occurrence that results in the expression of alleles specific to the parent of origin, plays pivotal roles in plant development, stress adaptation, and agronomic trait regulation. While imprinting has been intensively investigated in model plants (e.g. Arabidopsis, maize, and rice), its dynamic regulatory mechanisms and evolutionary implications remain enigmatic. Recent advances in bioinformatics-including single-cell omics, machine learning, and deep learning-have revolutionized the identification, functional annotation, and network modeling of imprinted genes. This review not only provides a detailed summary of the identification, functions and regulatory mechanisms of plant imprinted genes, but also systematically summarizes methodologies for studying plant genomic imprinting, highlights challenges in multi-omics data integration, and envisions artificial intelligence-driven strategies for epigenetic breeding.

Indexed as

Computational BiologyGenome, PlantGenomic ImprintingPlantsEpigenesis, GeneticEpigenomicsMultiomicsbioinformaticscrop epigenomicsepigeneticsgenomic imprintingmulti-omics integration

Identifiers

PMID41511814
PMCPMC12785899

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.