Evidence map›Paper›PMID 41512071›Full record

ArticleScience advances2026

Basis for lineage-determining pioneer factors targeting distinct repressed chromatin states.

Andrew Katznelson, Jingchao Zhang, Greg Donahue, Kenneth S Zaret

Abstract read
In one paragraph

Article in Science advances, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. AlphaGenome Atlas:medRxiv : the preprint server for health sciences · 2026
    Article
  2. Article
  3. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Andrew KatznelsonInstitute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-7381-748X
Jingchao ZhangInstitute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0002-2059-9255
Greg DonahueInstitute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.
Kenneth S ZaretInstitute for Regenerative Medicine, University of Pennsylvania, Philadelphia, PA 19104, USA.ORCID 0000-0001-8932-3145

Funding

PREDOCTORAL TRAINING PROGRAM IN GENETICST32GM008216 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI EPSTEIN, DOUGLAS J · 1987 to 2023
$8.3M
TRANS-ACTING FACTORS CAUSING CELL-SPECIFIC GENE CONTROLR01GM036477 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI ZARET, KENNETH · 1986 to 2023
$7.7M
Transcription Factors Overcoming Chromatin Barriers to Control Cell FateR35GM153180 · NIGMS · UNIVERSITY OF PENNSYLVANIA · PI Kenneth Zaret · 2024 to 2026
$2.2M
NIGMS NIH HHS R01 GM036477NIGMS NIH HHS R35 GM153180NIGMS NIH HHS T32 GM008216
6 · The paper itself

Abstract

Pioneer transcription factors target transcriptionally silent chromatin, thereby enabling gene activation in development, regeneration, and cell reprogramming. However, silent chromatin is heterogeneous, varying in nucleosome stability, nucleosome compaction, and repressive histone modifications, and how pioneer factors may differentially overcome these different chromatin barriers is unknown. We systematically compared the chromatin targeting of 13 embryonic transcription factors and found that the DNA binding domain (DBD) type predicts whether a pioneer factor targets low-turnover nucleosomes in compact chromatin, dynamic nucleosomes in compact chromatin or functions as a nonpioneer factor targeting accessible chromatin. By contrast, non-DBD domains enable targeting of repressed chromatin marked by H3K9me3 or H3K27me3

Indexed as

Cell LineageChromatinTranscription FactorsAnimalsCellular ReprogrammingChromatin Assembly and DisassemblyHeterochromatinHistonesMiceNucleosomesProtein BindingSOXB1 Transcription FactorsChromatinHeterochromatinHistonesNucleosomesSOXB1 Transcription FactorsTranscription Factors

Identifiers

PMID41512071
PMCPMC12787584

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.