Evidence map›Paper›PMID 41514895›Full record

ReviewBiology2025

Biophysics of Bacterial Colonial Structures and the Occupancy of Microecological Spaces.

Fernando Baquero, Teresa M Coque, Natalia Bastón-Paz, Ana Elena Pérez-Cobas

Abstract readReview
In one paragraph

Review in Biology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Fernando BaqueroDepartment of Microbiology, Ramón y Cajal Institute for Health Research (IRYCIS), Ramón y Cajal University Hospital, 28034 Madrid, Spain.ORCID 0000-0002-7930-3033
Teresa M CoqueDepartment of Microbiology, Ramón y Cajal Institute for Health Research (IRYCIS), Ramón y Cajal University Hospital, 28034 Madrid, Spain.ORCID 0000-0002-8228-3491
Natalia Bastón-PazDepartment of Microbiology, Ramón y Cajal Institute for Health Research (IRYCIS), Ramón y Cajal University Hospital, 28034 Madrid, Spain.ORCID 0000-0002-0372-2119
Ana Elena Pérez-CobasDepartment of Microbiology, Ramón y Cajal Institute for Health Research (IRYCIS), Ramón y Cajal University Hospital, 28034 Madrid, Spain.ORCID 0000-0002-3995-5571

Funding

Instituto de Salud Carlos III PI21/01363
6 · The paper itself

Abstract

The process of bacterial reproduction on surfaces conducive to growth forms colonies, which are defined as physical bodies with functional and environmental effects. This phenomenon can be conceptualized as transforming biological processes into physical phenomena. Large bacterial multicellular aggregates can be conceptualized as physical entities, produced by "colonial organisms", thereby transforming physics into biology. The formation of colonies requires surfaces, typically hydrogels or liquid-air interfaces, but also hard solid surfaces. Bacterial cell layers also contribute to the production of surfaces. Within a typical 3D-shaped, frequently domed colony, a variety of microcompartments form at the intersections of gradients that diffuse from its aerial and surface limits, leading to cellular functional diversity. This heterogeneity can lead to physical changes and fractures in the colony material, leading to the formation of fluid microchannels. The second primary type of colony is the 2D-shaped form that spreads over larger surfaces and is known as a biofilm. These physical structures possess significant water content, which is retained by a bacterial-excreted exopolymer. Biofilms are structurally organized as multilayer structures that can expand in the space through the lateral slippage of a more fluid overlayer on top of the surface-attached layer. The dissemination of biofilms may entail the integration of additional bacterial colonies, thereby giving rise to complex biofilms. The physical occupancy of microenvironments by colonies created on surfaces of higher organisms or on environmental surfaces exerts a significant influence on fluid mechanics and the functioning of organisms and ecosystems. In addition, colonies also contribute to the pathology of industrial constructions and devices, often leading to microbiologically influenced electrochemical corrosion, which results in material degradation.

Indexed as

biofilmscolonial organismscoloniescorrosionmicrobial biophysicsmicrobial massesmicrobiotamicroecologymulticellularity

Identifiers

PMID41514895
PMCPMC12784831

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.