Evidence map›Paper›PMID 41533562›Full record

ArticleNucleic acids research2026

Single-molecule experiments reveal NusG displaces transcription initiation factor σ70 from mature elongation complexes.

Pratip Mukherjee, Sk Alim, Sneha Shahu, Saradindu Mondal, Krishnananda Chattopadhyay, Mahipal Ganji, Abhishek Mazumder

Abstract read
In one paragraph

Article in Nucleic acids research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

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4 · The record

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5 · Who and what money

Authors and funding

7 authors.

Pratip MukherjeeStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India.
Sk AlimStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India.
Sneha ShahuDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.
Saradindu MondalStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India.
Krishnananda ChattopadhyayStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India.
Mahipal GanjiDepartment of Biochemistry, Indian Institute of Science, Bengaluru 560012, India.ORCID 0000-0001-8176-3322
Abhishek MazumderStructural Biology and Bioinformatics Division, CSIR-Indian Institute of Chemical Biology, 4, Raja S. C. Mullick Road, Jadavpur, Kolkata 700032, India.

Funding

DBT/Wellcome Trust India Alliance IA/I/21/2/505898DBT/Wellcome Trust India Alliance IA/I/21/2/505928UGC 221610073587
6 · The paper itself

Abstract

The Escherichia coli transcription initiation factor σ70 was long believed to dissociate from RNA polymerase after promoter escape, following synthesis of short ~9-11 nt RNAs. However, recent evidence indicates σ70 is retained in elongation complexes (ECs), where it enhances pausing-implying that stochastic or factor-mediated displacement is required for processive elongation. Using fluorescence correlation spectroscopy, we quantified σ70 retention in the presence of elongation factors NusG and NusA, demonstrating that NusG-but not NusA-actively promotes σ70 dissociation. Single-molecule TIRF further revealed that NusG-mediated σ70 dissociation becomes favourable as ECs progress, with lower energy barriers for displacement in later elongation stages. These findings suggest a broader mechanistic paradigm in which elongation factors actively displace initiation factors to regulate transcription-a process that may be conserved across all domains of life.

Indexed as

Escherichia coli ProteinsPeptide Elongation FactorsSigma FactorTranscriptional Elongation FactorsTranscription Elongation, GeneticTranscription FactorsDNA-Directed RNA PolymerasesEscherichia coliPromoter Regions, GeneticSingle Molecule ImagingTranscription, GeneticDNA-Directed RNA PolymerasesEscherichia coli ProteinsnusA protein, E coliNusG protein, E coliPeptide Elongation FactorsRNA polymerase sigma 70Sigma FactorTranscriptional Elongation FactorsTranscription Factors

Identifiers

PMID41533562
PMCPMC12802917

What Socratic holds

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LicenceCC BY-NC
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.