Evidence map›Paper›PMID 41538409›Full record

ArticleAnalytical chemistry2026

Quantitative Mass Spectrometry Imaging of Intact Proteins in Tissues.

Mushfeqa Iqfath, Andrew K Swansiger, Manxi Yang, Lily Miller, Alyssa M Moore, Emerson Hernly, Yunpeng Bai, Zhong-Yin Zhang, James S Prell, Julia Laskin

Abstract read
In one paragraph

Article in Analytical chemistry, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Mushfeqa IqfathJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0001-8464-3799
Andrew K SwansigerDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-7320-5491
Manxi YangJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0003-0589-1757
Lily MillerDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.
Alyssa M MooreJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0009-0003-0984-3231
Emerson HernlyJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0009-0009-6374-3761
Yunpeng BaiDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States.
Zhong-Yin ZhangDepartment of Medicinal Chemistry and Molecular Pharmacology, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0001-5527-7910
James S PrellDepartment of Chemistry and Biochemistry, University of Oregon, Eugene, Oregon 97403, United States.ORCID 0000-0002-7505-9168
Julia LaskinJames Tarpo Jr. and Margaret Tarpo Department of Chemistry, Purdue University, West Lafayette, Indiana 47907, United States.ORCID 0000-0002-4533-9644

Funding

Structure/Function of Protein Tyrosine PhosphatasesR01CA069202 · NCI · YESHIVA UNIVERSITY · PI Zhong-Yin Zhang · 1996 to 2026
$7.3M
Next-generation spatial -omics: High-throughput, single-molecule proteomic imaging with subcellular resolutionR01MH136394 · NIMH · CALIFORNIA INSTITUTE OF TECHNOLOGY · PI ROUKES, MICHAEL L · 2023 to 2024
$5.9M
Novel Platform for Quantitative Subcellular Resolution Imaging of Human Tissues Using Mass SpectrometryUH3CA255132 · NCI · PURDUE UNIVERSITY · PI LASKIN, JULIA · 2020 to 2021
$1.3M
NCI NIH HHS R01 CA069202NCI NIH HHS UH3 CA255132NIMH NIH HHS R01 MH136394
6 · The paper itself

Abstract

Quantitative imaging of endogenous proteins in biological tissues is essential for understanding their roles in cellular signaling and metabolism. Mass spectrometry imaging (MSI) using nanospray desorption electrospray ionization (nano-DESI) is a label-free approach for mapping intact proteins in biological tissues with minimal sample preparation. However, signal suppression during ionization presents a challenge for quantification. In this study, we introduce a quantitative nano-DESI MSI approach by incorporating protein internal standards (IS) into the extraction solvent. Ion images were generated using iFAMS deconvolution software, which efficiently isolates protein-specific signals from a complex background. A systematic evaluation of normalization strategies indicates that accurate quantification in each pixel is achieved using charge-weighted signal normalization to the IS signal. We demonstrate quantitative imaging of endogenous proteins using only one IS and validate the approach using immunofluorescence imaging and bulk analysis. This robust approach enables accurate protein mapping and quantification in MSI experiments, providing deeper insights into protein function in complex biological systems.

Indexed as

ProteinsSpectrometry, Mass, Electrospray IonizationAnimalsProteins

Identifiers

PMID41538409
PMCPMC12976962

What Socratic holds

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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.