Evidence map›Paper›PMID 41555822›Full record

ArticleBiology open2026

A protocadherin mediates oral placode morphogenesis in the tunicate Ciona.

Sriikhar Vedurupaka, Bita Jadali, Christopher J Johnson, Alberto Stolfi, Sydney Popsuj

Abstract read
In one paragraph

Article in Biology open, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

5 authors.

Sriikhar VedurupakaSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Bita JadaliSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Christopher J JohnsonSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Alberto StolfiSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.ORCID 0000-0001-7179-9700
Sydney PopsujSchool of Biological Sciences, Georgia Institute of Technology, Atlanta, GA 30332, USA.ORCID 0000-0001-8346-7623

Funding

Regulation of neurodevelopmental cell behaviors in CionaR01HD104825 · NICHD · GEORGIA INSTITUTE OF TECHNOLOGY · PI Christina Donata Cota, Alberto Stolfi · 2022 to 2026
$1.6M
Leveraging the biphasic life cycle of a non-vertebrate chordate to investigate developmental transitions and phenotypic plasticityR35GM158421 · NIGMS · GEORGIA INSTITUTE OF TECHNOLOGY · PI Alberto Stolfi · 2025 to 2026
$772k
Achievement Rewards for College Scientists FoundationDivision of Integrative Organismal Systems 1940743Eunice Kennedy Shriver National Institute of Child Health and Human Development R01HD104825Georgia Institute of TechnologyMortar BoardNICHD NIH HHS R01 HD104825NIGMS NIH HHS R35 GM158421NIGMS NIH HHS R35GM158421
6 · The paper itself

Abstract

In chordate embryos, placodes are ectodermal thickenings around the borders of the neural plate that give rise to various sensory organs and cell types. While generally thought to be a vertebrate-specific innovation, homologous placodes are proposed to exist in non-vertebrate chordates as well. In Ciona robusta, a solitary tunicate, the adult mouth (the oral siphon) is derived from one such 'cranial-like' placode in the larva, which we term the oral siphon placode (OSP). At embryonic and larval stages, the OSP consists of a small rosette of cells that form from the neuropore at the anteriormost extent of neural tube closure. While the morphogenesis of the OSP and its physical separation from other surface ectoderm structures have been described in detail, how this is regulated at the molecular level is currently unknown. Here, we show the involvement of protocadherin-mediated cell-cell interactions in the proper morphogenesis of the OSP. Protocadherin.e (Pcdh.e) is expressed specifically in the OSP, but not in other surface ectoderm cells. CRISPR/Cas9-mediated disruption of Pcdh.e in these cells results in the failure of the OSP to physically separate from other structures derived from the same cell lineage. Overexpression of Pcdh.e throughout the anterior surface ectoderm results in a similar loss of a physically separate and distinct OSP territory. This effect is likely mediated by homophilic adhesion in trans, as Pcdh.e with scrambled extracellular domains failed to recapitulate the phenotype. Finally, we show that Pcdh.e expression in the OSP depends on oral placode-specific transcription factors such as Six1/2 and Pitx. Our results suggest that OSP morphogenesis requires precise regulation of a homotypic cell-cell adhesion molecule, which might reflect a conserved mechanism for placode formation in chordates.

Indexed as

CadherinsCionaEctodermal PlacodesMorphogenesisAnimalsEctodermGene Expression Regulation, DevelopmentalProtocadherinsCadherinsProtocadherinsCionaPitxPlacodeProtocadherinSix1/2Tunicate

Identifiers

PMID41555822
PMCPMC12958291

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.