Evidence map›Paper›PMID 41573823›Full record

ArticlebioRxiv : the preprint server for biology2026

bronko: ultrafast, alignment-free detection of viral genome variation.

Ryan D Doughty, Michael J Tisza, Todd J Treangen

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Ryan D DoughtyDepartment of Computer Science, Rice University, Houston TX 77005, USA.ORCID 0009-0001-8355-0926
Michael J TiszaDepartment of Molecular Virology and Microbiology, Baylor College of Medicine, Houston TX 77030, USA.ORCID 0000-0003-1168-1617
Todd J TreangenDepartment of Computer Science, Rice University, Houston TX 77005, USA.ORCID 0000-0002-3760-564X

Funding

Viral Diversity and Pathogenicity in Mucosal Respiratory and Gastrointestinal DiseaseU19AI144297 · NIAID · BAYLOR COLLEGE OF MEDICINE · PI ESTES, MARY KOLB, GIBBS, RICHARD A · 2019 to 2024
$30.1M
TRAINING PROGRAM IN COMPUTATIONAL BIOLOGY AND MEDICINET15LM007093 · NLM · RICE UNIVERSITY · PI Lydia E. Kavraki · 1992 to 2026
$20.8M
The Pan-Human Virome Atlas: From Single-Cell Mapping to Population-Scale LandscapesU54AG089335 · NIA · UNIVERSITY OF CALIFORNIA LOS ANGELES · PI JAMES R CERHAN, Yvonne L Kapila · 2025 to 2026
$13.0M
Project 3: Functional Microbiome and Host Signatures in Transition from Commensal to pathogenP01AI152999 · NIAID · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI ARIAS, CESAR AUGUSTO, SAVIDGE, TOR C. · 2020 to 2025
$12.0M
NIAID NIH HHS P01 AI152999NIAID NIH HHS U19 AI144297NIA NIH HHS U54 AG089335NLM NIH HHS T15 LM007093
6 · The paper itself

Abstract

As viral sequencing datasets continue to grow, traditional alignment-based variant calling pipelines are becoming computationally prohibitive. To address these challenges, we developed

Indexed as

Alignment-FreeK-mersViral Genomics

Identifiers

PMID41573823
PMCPMC12822698

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.