ArticleGenome biology2026
Campolina: a deep neural framework for accurate segmentation of nanopore signals.
Article in Genome biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.
What it found
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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.
The trial behind it
Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.
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Who cites it
2 citing papers in PubMed.
- Rawsamble: overlapping raw nanopore signals using a hash-based seeding mechanism.Bioinformatics (Oxford, England) · 2026Article
- Campolina: a deep neural framework for accurate segmentation of nanopore signals.Genome biology · 2026Article
Corrections and comments
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Authors and funding
4 authors.
Funding
Abstract
Nanopore sequencing enables real-time, long-read analysis by processing raw signals as they are produced. A key step, segmentation of signals into events, is typically handled algorithmically, struggling in noisy regions. We present Campolina, a first deep-learning framework for accurate segmentation of raw nanopore signals. Campolina uses a convolutional model to identify event boundaries and significantly outperforms the traditional Scrappie algorithm on R9.4.1 and R10.4.1 datasets. We introduce a comprehensive evaluation pipeline and show that Campolina aligns better with reference-guided ground-truth segmentation. We show that integrating Campolina segmentation into real-time frameworks, Sigmoni and RawHash2, improves their performance while maintaining time efficiency.
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What Socratic holds
Registered trials
Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.