Evidence map›Paper›PMID 41630179›Full record

ArticleEuropean journal of immunology2026

Proteomic Analysis of Regulated Dendritic Cell Endosomes Reveals Dynamic Adaptation to Antigen Uptake and Cross-Presentation.

Alice Senni, Louise Grumbach, Sara Ceccacci, Mathieu Frechin, Nicolas Goudin, Ida Chiara Guerrera, Barbara Bertocci, Peter van Endert

Abstract read
In one paragraph

Article in European journal of immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Alice SenniUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, Paris, France.
Louise GrumbachUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, Paris, France.
Sara CeccacciProteomics Platform Necker, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, Paris, France.
Mathieu FrechinNanolive SA, Lake Geneva Park, Tolochenaz, Switzerland.
Nicolas GoudinUniversité Paris Cité, INSERM, CNRS, Structure Fédérative de Recherche Necker, Bio-Image Analysis Platform, Paris, France.
Ida Chiara GuerreraProteomics Platform Necker, Université Paris Cité - Structure Fédérative de Recherche Necker, INSERM US24/CNRS UAR3633, Paris, France.
Barbara BertocciUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, Paris, France.
Peter van EndertUniversité Paris Cité, INSERM, CNRS, Institut Necker Enfants Malades, Paris, France.ORCID 0000-0003-3782-0750

Funding

CAPSTONE 954992-CAPSTONE-H2020-MSCA-ITN-2020CAPSTONE (954992-CAPSTONE-H2020-MSCA-ITN-2020)
6 · The paper itself

Abstract

MHC class I (MHC-I) cross-presentation involves final proteolytic peptide processing by the endosomal insulin-regulated aminopeptidase (IRAP). Reasoning that analysis of the IRAP-proximal proteome may inform about dynamic remodeling of a key cross-presentation compartment during antigen uptake, we developed a proximity biotinylation system by expressing an IRAP-TurboID fusion protein in MuTuDCs, a cell line resembling murine type 1 conventional dendritic cells. Analysis of luminal proteins associated with IRAP at steady state and during phagocytosis revealed a massive shift upon uptake of yeast but not apoptotic cells, favoring enrichment of antigen-processing machinery, MHC-I molecules, and proteins involved in ER-associated folding and trafficking. Importantly, Sec22b modulated this proteomic landscape, promoting the localization of MHC-I cross-presentation proteins (e.g., MHC-I, Tap1, Wdfy4, transferrin receptor) to the IRAP environment, while its absence favored MHC-II and ER-related proteins, suggesting a Sec22b-dependent dichotomy between pathways favoring cross-presentation versus antigen degradation. Intriguingly, uptake of apoptotic cells failed to promote cross-presentation but induced two proteins related to immune tolerance, suggesting potential adaptation of proteome modulation to the outcome of antigen presentation. These data suggest that IRAP

Indexed as

Antigen PresentationCross-PrimingCystinyl AminopeptidaseDendritic CellsEndosomesAnimalsAntigensCell LineHistocompatibility Antigens Class IMicePhagocytosisProteomicsR-SNARE ProteinsAntigensCystinyl AminopeptidaseHistocompatibility Antigens Class Ileucyl-cystinyl aminopeptidaseR-SNARE ProteinsSec22b protein, mousecross‐presentationdendritic cellendosomeinsulin‐regulated aminopeptidaseproximity biotinylation

Identifiers

PMID41630179
PMCPMC12865135

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.