Evidence map›Paper›PMID 41634784›Full record

ArticleArthritis research & therapy2026

Sjögren's patient subgroups identified through whole genome DNA methylation profiling.

Olivia Solomon, Caroline Shiboski, Kimberly E Taylor, Hong Quach, Diana Quach, Lisa F Barcellos, Lindsey A Criswell

Erratum issuedAbstract read
In one paragraph

Article in Arthritis research & therapy, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors.

Olivia SolomonGenetic Epidemiology and Genomics Laboratory, School of Public Health, University of California, 324 Stanley Hall, MC#3220, Berkeley, CA, 94720, USA.
Caroline ShiboskiDepartment of Orofacial Sciences, School of Dentistry, University of California, San Francisco, California, USA.
Kimberly E TaylorDepartment of Medicine, Russell/Engleman Rheumatology Research Center, University of California, San Francisco, California, USA.
Hong QuachGenetic Epidemiology and Genomics Laboratory, School of Public Health, University of California, 324 Stanley Hall, MC#3220, Berkeley, CA, 94720, USA.
Diana QuachGenetic Epidemiology and Genomics Laboratory, School of Public Health, University of California, 324 Stanley Hall, MC#3220, Berkeley, CA, 94720, USA.
Lisa F Barcellos *Genetic Epidemiology and Genomics Laboratory, School of Public Health, University of California, 324 Stanley Hall, MC#3220, Berkeley, CA, 94720, USA. lbarcellos@berkeley.edu.
Lindsey A Criswell *Genomics of Autoimmune Rheumatic Disease Section, National Human Genome Research Institute, National Institute of Health, Bethesda, Maryland, USA.

Funding

Sjögren's International Collaborative Clinical Alliance Next Generation Studies (SICCA-NextGen)U01DE028891 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHIBOSKI, CAROLINE HELENE · 2020 to 2024
$4.0M
Epigenetic and transcriptomic determinants of Sjogren's Syndrome subtypes utilizing data from the Sjogren's International Collaborative Clinical Alliance (SICCA) cohortR03DE029800 · NIDCR · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI SHIBOSKI, CAROLINE HELENE · 2020 to 2021
$323k
Global and Local Genetic Ancestry Impacts on Differential Outcome of Systemic Lupus Erythematosus and Multiple SclerosisF31MD015673 · NIMHD · UNIVERSITY OF CALIFORNIA BERKELEY · PI SOLOMON, OLIVIA · 2021 to 2023
$130k
NIDCR NIH HHS R03 DE029800NIDCR NIH HHS R03DE029800NIDCR NIH HHS U01 DE028891NIDCR NIH HHS U01DE028891NIMHD NIH HHS F31 MD015673NIMHD NIH HHS F31MD015673
6 · The paper itself

Abstract

objectiveSjögren’s disease (SjD) is a heterogeneous autoimmune disorder characterized by lymphocytic infiltration of exocrine glands resulting in severe oral and ocular dryness. Previous published work showed DNA methylation (DNAm) can distinguish SjD case subgroups based on clinical features; however, studies used small samples and did not adjust for cellular heterogeneity in labial salivary glands (LSGs). Our objectives were to: (1) identify DNAm clusters from LSGs; (2) investigate cluster clinical characteristics; and (3) identify differential methylation between SjD case subgroups to further understand biological pathways.

methodsWe identified clinically meaningful subgroups of SjD through hierarchical clustering of DNAm embeddings from a variational autoencoder (VAE) of LSGs, which allows for a low dimensional representation of the high dimensional methylation data. LSGs from 1,059 SjD cases (n = 592) and symptomatic non-cases (n = 467) were profiled using the Illumina HumanMethylationEPIC BeadChip, and cell-type proportions were estimated using a solid-tissue reference.

resultsParticipants clustered into subgroups with differential SjD features and proportions of predicted cell-types. Comparison of SjD cases within distinct clusters showed evidence for differential methylation in each cell-type. The largest number of differences between subgroups occurred in epithelial and B-cells and were in genes and pathways with relevance to disease pathogenesis. In B-cells, methylation within NR2F2, previously reported to be differentially expressed in lacrimal glands of SjD mouse models, and NDRG2, which increases saliva production in estrogen deficient rats, distinguished subgroups with different clinical manifestations. Additional candidates of interest identified in epithelial and B-cells from SjD cases include genes previously implicated in systemic lupus erythematosus.

conclusionThese findings provide insight into the powerful link between epigenetics and clinical heterogeneity in SjD and contribute to classification of important patient subgroups.

Indexed as

DNA MethylationSjogren's SyndromeAdultAgedCluster AnalysisFemaleGene Expression ProfilingHumansMaleMiddle AgedSalivary Glands

Identifiers

PMID41634784
PMCPMC12896019

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.