Evidence map›Paper›PMID 41642876›Full record

ArticlePloS one2026

Identification of elite rice lines with better breeding values using genomic prediction and multi-trait genotype ideotype distance index (MGIDI) for grain yield under irrigation cropping system.

S S Chaity, M R Islam, M Faruquee, J U Ahmed, A K M Aminul Islam

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In one paragraph

Article in PloS one, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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0cells of the map it votes in
2citing papers in PubMed
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1 · What the graph read from it

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2 · The registry

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3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

5 authors.

S S ChaityDepartment of Genetics and Plant Breeding, Gazipur Agricultural University, Gazipur, Bangladesh.ORCID https://orcid.org/0009-0008-9176-1265
M R IslamInternational Rice Research Institute (IRRI), Dhaka, Bangladesh.
M FaruqueeInternational Rice Research Institute (IRRI), Dhaka, Bangladesh.
J U AhmedDepartment of Crop Botany, Gazipur Agricultural University, Gazipur, Bangladesh.
A K M Aminul IslamDepartment of Genetics and Plant Breeding, Gazipur Agricultural University, Gazipur, Bangladesh.ORCID https://orcid.org/0000-0001-8270-5968

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

For a rice breeding program to produce the desired genotypes, parental selection is the most important factor. To select elite parental materials, this study evaluated 200 International Rice Research Institute (IRRI) developed advanced breeding lines during 2022 Wet Season (WS-T. Aman) and 2023 Dry Season (DS-Boro) along with two sets of check (10 global and 6 different local for each season) using an alpha lattice design with two replications in the research field of Gazipur Agricultural University, Gazipur-1706. Among the breeding lines, significant genetic variation was found and according to heritability and genetic advance analysis, additive gene action controls plant height (PH), panicle length (PL), spikelet fertility (SF), thousand grain weight (TGW), and grain yield (t/ha) (GYTH). Correlation coefficients revealed that in both season yield has a positive relationship with panicle length (0.20**, 0.35***), spikelet fertility (0.19**, 0.23***), days to maturity (DTM) (0.37***, 0.24***), and days to 50% flowering (DFF) (0.34***, 0.29***). In this study, Principal Component Analysis (PCA) revealed 4 & 3 PCs in 2022WS and 2023DS contributing to 66.90% & 61.90% of total variability with eigenvalues>1. The Multi-Trait Genotype-Ideotype Distance Index (MGIDI) analysis results a total genetic gain of 28.51% & 25.86% in 2022WS & 2023DS and identified IR19A8066, IR19A8052, IR19A7440, IR19A9061, and IR19A9054 genotypes as valuable resources for developing recombinant populations, aligning with sustainable and effective crop improvement strategies. For parental selection, IR19A8054, IR19A8052, IR19A7501, IR19A8047, IR19A8066, IR19A7531, IR19A7523, IR19A7541, IR19A7510 with Genomic Estimated Breeding Value (GEBV)>0.50 for yield are preferred. The maximum yield (5.34 t/ha) in 2022WS was generated by check RABI dhan1, while 5.12 t/ha was produced by IR19A7664, and more than 4.50 t/ha was produced by IR19A9054, IR19A7408, and IR19A7440. When compared to check BRRI dhan89 (7.97 t/ha), IR19A7339 delivered the highest in 2023DS (8.67 t/ha), followed by IR19A7510, IR19A7523, IR19A8047, and IR19A8066 (>8 t/ha). With positive GEBVs of 0.19, 0.32, and 0.62, respectively, IR19A9054, IR19A9212, and IR19A8066 demonstrated superior yield in both rice growing seasons.

Indexed as

Agricultural IrrigationEdible GrainOryzaPlant BreedingGenetic VariationGenome, PlantGenomicsGenotypePhenotypeQuantitative Trait Loci

Identifiers

PMID41642876
PMCPMC12875472

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.