Evidence map›Paper›PMID 41645083›Full record

ArticleBMC cancer2026

Conjoining cell reprogramming and mass spectrometry to identify the proteomic variations in the reprogrammed bladder cancer cells: finding cues of normalisation.

Banu Iskender, Mehmet Sarihan, Bengi Su Rumeysa Barlak, Gurler Akpinar, Murat Kasap

Abstract read
In one paragraph

Article in BMC cancer, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Banu IskenderFaculty of Medicine, Department of Medical Biology, Protein Research and Proteomics Laboratory, Kocaeli University, Umuttepe, Izmit, 41001, Kocaeli, Türkiye. banu.iskender@yahoo.com.ORCID http://orcid.org/0000-0001-7122-1589
Mehmet SarihanFaculty of Medicine, Department of Medical Biology, Protein Research and Proteomics Laboratory, Kocaeli University, Umuttepe, Izmit, 41001, Kocaeli, Türkiye.ORCID http://orcid.org/0000-0002-1565-5718
Bengi Su Rumeysa BarlakFaculty of Medicine, Department of Medical Biology, Protein Research and Proteomics Laboratory, Kocaeli University, Umuttepe, Izmit, 41001, Kocaeli, Türkiye.ORCID http://orcid.org/0009-0009-3358-9089
Gurler AkpinarFaculty of Medicine, Department of Medical Biology, Protein Research and Proteomics Laboratory, Kocaeli University, Umuttepe, Izmit, 41001, Kocaeli, Türkiye.ORCID http://orcid.org/0000-0002-9675-3714
Murat KasapFaculty of Medicine, Department of Medical Biology, Protein Research and Proteomics Laboratory, Kocaeli University, Umuttepe, Izmit, 41001, Kocaeli, Türkiye.ORCID http://orcid.org/0000-0001-8527-2096

Funding

The Health Institutes of Türkiye (TUSEB) 24232
6 · The paper itself

Abstract

backgroundCancer cell reprogramming is a critical area of research that holds the power to transform malignancies into benign states while revealing key mechanisms of carcinogenesis. This study aimed to develop a more effective in vitro bladder cancer model using induced pluripotent stem cell technology and identify potential diagnostic and therapeutic biomarkers for bladder cancer.

methodsSendai virus-based reprogramming was utilised to reprogram the bladder cancer cell line HTB-5. The reprogrammed cells were characterised by expressing pluripotency-associated markers, colony formation abilities, cell migration, and drug responses. LC-MS/MS reveals changes in protein composition among parental cancer cells, reprogrammed cancer cells, and normal uroepithelial cells.

resultsReprogrammed bladder cancer cells display the expression of pluripotency-associated markers and demonstrate altered behaviours, including cell migration and responses to anticancer therapies. The genome-wide regulation by Sendai-virus delivery of Yamanaka factors resulted in distinctive protein expression patterns in reprogrammed bladder cancer cells, indicative of the pluripotency as well as spontaneous differentiation. A total of 297 dysregulated proteins in bladder cancer cells were normalised upon reprogramming. We proposed 25 potential biomarker candidates for diagnostic and therapeutic purposes, of which 12 candidates were demonstrated for the first time at the protein level.

conclusionsDifferentially regulated proteins in parental bladder cancer cells and reprogrammed bladder cancer cells highlighted the critical protein-protein interactions that indicate the normalisation process of the parental bladder cancer cells. These cues could be used to pinpoint the candidate proteins to optimise the controlled partial/full reprogramming, to discover the therapeutic potential of reprogramming and to propose clinically relevant biomarker candidates.

Indexed as

Cellular ReprogrammingInduced Pluripotent Stem CellsProteomeProteomicsUrinary Bladder NeoplasmsBiomarkers, TumorCell Line, TumorCell MovementGene Expression Regulation, NeoplasticHumansMass SpectrometrySendai virusTandem Mass SpectrometryBiomarkers, TumorProteomeBiomarkerBladder cancerCancer cell reprogrammingPartial reprogrammingPluripotencyProteomics

Identifiers

PMID41645083
PMCPMC12977642

What Socratic holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.