Evidence map›Paper›PMID 41648306›Full record

ArticlebioRxiv : the preprint server for biology2026

GenCore: Genomic distance estimation using Locally Consistent Parsing.

Akmuhammet Ashyralyyev, Ege Sirvan, Ecem İlgün, Salem Malikic, Tuğkan Batu, S Cenk Sahinalp, Can Alkan

Abstract readPreprint
PubMed Full text at PMC Publisher
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Akmuhammet AshyralyyevDept of Computer Engineering, Bilkent University, Ankara 06800, Turkey.ORCID 0009-0002-8669-8333
Ege SirvanDept of Computer Engineering, Bilkent University, Ankara 06800, Turkey.
Ecem İlgünDept of Computer Engineering, Bilkent University, Ankara 06800, Turkey.ORCID 0000-0001-6496-6224
Salem MalikicCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, United States.ORCID 0000-0002-4215-5655
Tuğkan BatuDepartment of Mathematics, London School of Economics and Political Science, London, United kingdom.ORCID 0000-0003-3914-4645
S Cenk SahinalpCancer Data Science Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, MD 20892, United States.ORCID 0000-0002-2170-2808
Can AlkanDept of Computer Engineering, Bilkent University, Ankara 06800, Turkey.ORCID 0000-0002-5443-0706

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

In the era of exponential data generation, a fast, consistent, and efficient string processing technique is necessary to represent extensive genomic data. One of the earliest string processing techniques, predating MinHash and minimizer-based sketching, is Locally Consistent Parsing (LCP). This technique partitions an input string and identifies short, exactly occurring substrings called Availability: GenCore is available at https://github.com/BilkentCompGen/gencore.

Indexed as

comparative genomicsgenome representationLocally consistent parsing

Identifiers

PMID41648306
PMCPMC12871207

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.