Evidence map›Paper›PMID 41648478›Full record

ArticlebioRxiv : the preprint server for biology2026

SAGA/ATAC complexes sustain aberrant chromatin regulation and promote tumorigenesis in diffuse midline glioma.

Rosemary U Richard, Caitlin Bagnetto, Rebecca L Murdaugh, Brittany R Eberl, Alan L Jiao, Adam F Kebede, Barry M Zee, Margaret M Harrington, Mariella G Filbin, Akdes Serin-Harmanci and 2 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors.

Rosemary U RichardDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.
Caitlin BagnettoDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0009-0008-7307-6598
Rebecca L MurdaughDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-9950-8634
Brittany R EberlDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-2584-4969
Alan L JiaoLudwig Institute for Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford, UK.ORCID 0000-0002-8487-3567
Adam F KebedeLudwig Institute for Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Barry M ZeeDivision of Newborn Medicine, Department of Medicine, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.ORCID 0000-0002-3123-8375
Margaret M HarringtonThe Center for Cell and Gene Therapy (CAGT) and the Stem Cells and Regenerative Medicine Center (StAR), Baylor College of Medicine, Houston, TX, USA.
Mariella G FilbinDepartment of Pediatric Oncology, Dana-Farber Boston Children's Cancer and Blood Disorders Center, Boston, MA, USA.
Akdes Serin-HarmanciDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0001-6374-9041
Yang ShiLudwig Institute for Cancer Research, Nuffield Department of Medicine, University of Oxford, Oxford, UK.
Jamie N AnastasDepartment of Neurosurgery, Baylor College of Medicine, Houston, TX, USA.ORCID 0000-0002-5317-5352

Funding

Tumor BiologyP30CA125123 · NCI · BAYLOR COLLEGE OF MEDICINE · PI Suzanne AW Fuqua · 2007 to 2026
$73.9M
UM1HG006348: Cas9 Genome Integrity Supplemental ProposalUM1HG006348 · NHGRI · BAYLOR COLLEGE OF MEDICINE · PI Jason D. Heaney, Chih-Wei Logan Hsu · 2016 to 2026
$47.5M
Training In Cell and Gene TherapyT32HL092332 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI MALCOLM K. BRENNER, Bruno Di Stefano · 2008 to 2026
$6.9M
Noradrenergic mechanisms in breathing and respiratory pathophysiologiesR01HL130249 · NHLBI · BAYLOR COLLEGE OF MEDICINE · PI RAY, RUSSELL S · 2016 to 2024
$5.3M
METABOLIC IMPACTS OF TYPE II INTERFERON SIGNALS IN OBESITYR01DK114356 · NIDDK · BAYLOR COLLEGE OF MEDICINE · PI HARTIG, SEAN · 2017 to 2025
$4.6M
Training Program in Cell and Molecular BiologyT32GM136560 · NIGMS · BAYLOR COLLEGE OF MEDICINE · PI Rachel Nicole Arey, WEEI-CHIN LIN · 2020 to 2026
$3.9M
MECHANISMS OF POL II ELONGATION IN DIFFUSE MIDLINE GLIOMAR01NS129860 · NINDS · BAYLOR COLLEGE OF MEDICINE · PI Jamie N. Anastas · 2023 to 2026
$1.8M
CyTOF XT with Hyperion XTi platformS10OD036336 · OD · BAYLOR COLLEGE OF MEDICINE · PI BEETON, CHRISTINE · 2024 to 2024
$829k
BD FACSDiscover S8 Spectral and Imaging Cell SorterS10OD038251 · OD · BAYLOR COLLEGE OF MEDICINE · PI BEETON, CHRISTINE · 2025 to 2025
$563k
NCI NIH HHS P30 CA125123NHGRI NIH HHS UM1 HG006348NHLBI NIH HHS R01 HL130249NHLBI NIH HHS T32 HL092332NIDDK NIH HHS R01 DK114356NIGMS NIH HHS T32 GM136560NIH HHS S10 OD036336NIH HHS S10 OD038251NINDS NIH HHS R01 NS129860
6 · The paper itself

Abstract

Diffuse midline gliomas (DMG) are aggressive pediatric brain tumors characterized by chromatin and transcriptional dysregulation induced by H3K27M mutations. Strategies for overcoming epigenetic dysfunction to reduce DMG tumorigenesis remain limited. We identified multiple components of the SAGA and ATAC chromatin regulatory complexes as DMG genetic dependencies and found that genetic or pharmacological inhibition of the SAGA/ATAC-associated chromatin reader SGF29 reduces DMG proliferation. Small molecules targeting SAGA/ATAC-associated histone acetylation, ubiquitination, and methylation similarly suppressed DMG growth. Further chromatin profiling and RNAseq analyses reveal that SGF29 controls H3K9ac and H3K4me3 dynamics at both H3K27M-bound and H3K27M-independent target genes linked to proliferation, differentiation, and metabolism. Finally, we find that SAGA/ATAC inhibition may reduce DMG viability by repressing cholesterol metabolism gene expression and show that combinations of cholesterol- and SAGA/ATAC-targeting drugs synergistically reduce DMG growth. These findings reveal a functional link between SAGA/ATAC-dependent chromatin modulation and both transcriptional and metabolic dysregulation underlying DMG malignancy.

Identifiers

PMID41648478
PMCPMC12871717

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.