Evidence map›Paper›PMID 41648528›Full record

ArticlebioRxiv : the preprint server for biology2026

A non-canonical EZH2/TRIM28 epigenetic axis drives heparan sulfate remodeling and melanoma metastasis.

Neil G Patel, Alexandra Drakaki, Farhan Valummel, Jack C Moore, Amrita Basu, Bin Hu, Xiaolin Dong, Peng Zhao, Mees Botman, Emily Spector and 5 more

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

15 authors.

Neil G PatelComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0001-7594-088X
Alexandra DrakakiDepartment of Medical Biochemistry, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0009-0001-5496-7933
Farhan ValummelDepartment of Biochemistry and Molecular Biology, University of Georgia, Athens, Georgia 30602, United States.
Jack C MooreComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0001-9739-5528
Amrita BasuComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-9670-9908
Bin HuMassey Cancer Center, Virginia Commonwealth University; Richmond, VA, United States.
Xiaolin DongComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0009-0009-1698-1839
Peng ZhaoComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Mees BotmanDepartment of Medical Biochemistry, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, The Netherlands.
Emily SpectorComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.
Mark C MochelDepartment of Pathology, Virginia Commonwealth University; Richmond, VA, United States.ORCID 0000-0001-7306-8813
Lance WellsComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0003-4956-5363
Jennifer E KoblinskiMassey Cancer Center, Virginia Commonwealth University; Richmond, VA, United States.ORCID 0000-0002-7156-2030
Marten A HoeksemaDepartment of Medical Biochemistry, Amsterdam University Medical Center, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0001-5981-121X
Ryan J WeissComplex Carbohydrate Research Center, University of Georgia, Athens, Georgia 30602, United States.ORCID 0000-0002-4563-6075

Funding

Virus Vector Shared ResourceP30CA016059 · NCI · VIRGINIA COMMONWEALTH UNIVERSITY · PI Keri R Maher · 1985 to 2026
$51.0M
Investigating the molecular mechanisms of glycosaminoglycan assemblyR35GM150736 · NIGMS · UNIVERSITY OF GEORGIA · PI Ryan Joseph Weiss · 2023 to 2026
$1.5M
Glycoscience Training ProgramT32GM107004 · NIGMS · UNIVERSITY OF GEORGIA · PI AMSTER, I JONATHAN, HALTIWANGER, ROBERT S. · 2014 to 2021
$1.3M
NCI NIH HHS P30 CA016059NIGMS NIH HHS R35 GM150736NIGMS NIH HHS T32 GM107004
6 · The paper itself

Abstract

Melanoma progression and metastasis are driven not only by oncogenic alterations but also by epigenetic programs that dynamically remodel the tumor microenvironment. Heparan sulfate (HS) proteoglycans are key extracellular matrix components that integrate growth factor signaling, cell-matrix interactions, and migratory behavior by controlling ligand availability and receptor engagement, yet how chromatin-associated factors regulate HS remodeling in cancer remains poorly defined. Here, we identify the histone methyltransferase EZH2 as a key regulator of HS biosynthesis in melanoma. Integrated bioinformatic and genomic analyses revealed enrichment of EZH2 and additional Polycomb Repressive Complex (PRC) factors at regulatory regions of HS biosynthetic genes. CRISPR-mediated loss of EZH2 altered expression of multiple HS-modifying enzymes, most notably the secreted endosulfatases SULF1 and SULF2, resulting in enhanced HS 6-

Indexed as

epigenetic regulationEZH2glycosaminoglycansheparan sulfatemelanomametastasisSULF1transcriptionTRIM28

Identifiers

PMID41648528
PMCPMC12871662

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.