Evidence map›Paper›PMID 41648622›Full record

ArticlebioRxiv : the preprint server for biology2026

DNA synthesis inside the hepatitis B virus creates a high-energy spool.

Nora Gibes, Katie Culhane, Haitao Liu, Ji Xi, Karolyn Pionek, Smita Nair, Daniel D Loeb, Jianming Hu, Adam Zlotnick, Joseph Che-Yen Wang

Abstract readPreprint
In one paragraph

Article in bioRxiv : the preprint server for biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Nora GibesMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN, USA.ORCID 0009-0009-2529-1450
Katie CulhaneDepartment of Cell and Biological Systems, Penn State College of Medicine, Hershey, PA, USA.ORCID 0009-0007-9587-6580
Haitao LiuDepartment of Cell and Biological Systems, Penn State College of Medicine, Hershey, PA, USA.ORCID 0000-0002-6263-1508
Ji XiDepartment of Cell and Biological Systems, Penn State College of Medicine, Hershey, PA, USA.
Karolyn PionekMcArdle Laboratory for Cancer Research, University of Wisconsin-Madison, Madison, WI, USA.
Smita NairMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN, USA.ORCID 0000-0002-2983-3597
Daniel D LoebMcArdle Laboratory for Cancer Research, University of Wisconsin-Madison, Madison, WI, USA.ORCID 0000-0001-7883-7650
Jianming HuDepartment of Cell and Biological Systems, Penn State College of Medicine, Hershey, PA, USA.ORCID 0000-0002-3967-2133
Adam ZlotnickMolecular and Cellular Biochemistry Department, Indiana University, Bloomington, IN, USA.ORCID 0000-0001-9945-6267
Joseph Che-Yen WangDepartment of Cell and Biological Systems, Penn State College of Medicine, Hershey, PA, USA.ORCID 0000-0001-6580-3531

Funding

Visualizing EBV and HCMV DNA Dynamics During InfectionP01CA022443 · NCI · UNIVERSITY OF WISCONSIN-MADISON · PI Paul F. Lambert · 1985 to 2026
$53.1M
Mechanisms of Hepadnavirus Assembly and ReplicationR37AI043453 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Jianming Hu · 2018 to 2026
$3.8M
Structural characterization of native HBV capsids and virions from human cellsR01AI173104 · NIAID · PENNSYLVANIA STATE UNIV HERSHEY MED CTR · PI Joseph Che-Yen Wang · 2023 to 2026
$2.8M
The Structural Biology of HBVR01AI144022 · NIAID · TRUSTEES OF INDIANA UNIVERSITY · PI ZLOTNICK, ADAM · 2019 to 2022
$1.5M
Mechanisms of Avian Hepadnavirus ReplicationR01AI060018 · NIAID · UNIVERSITY OF WISCONSIN-MADISON · PI LOEB, DANIEL D · 2005 to 2008
$1.4M
NCI NIH HHS P01 CA022443NIAID NIH HHS R01 AI060018NIAID NIH HHS R01 AI144022NIAID NIH HHS R01 AI173104NIAID NIH HHS R37 AI043453
6 · The paper itself

Abstract

The Hepatitis B Virus (HBV) capsid assembles around an RNA pregenome which is reverse-transcribed into double-stranded DNA. It remains unclear how this DNA, which is stiff, bulky, and has significant negative charge, is accommodated within the capsid. The organization of the genome will answer this and lend insight into the viral reverse transcription reaction. We determined the structures of mature HBV and Duck HBV, finding that the DNA forms a spool that is coaxial with the capsid's fivefold symmetry and interacts with charges on the capsid interior. We calculate that the energy of DNA bending would create a metastable capsid that just awaits a trigger for DNA release. Thus, we see how nature has created a fragile energy minimum that enables genome uncoating.

Identifiers

PMID41648622
PMCPMC12871785

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.