Evidence map›Paper›PMID 41653916›Full record

ArticleCell genomics2026

Nematode extracellular protein interactome expands connections between signaling pathways.

Wioletta I Nawrocka, Shouqiang Cheng, Bingjie Hao, Matthew C Rosen, Elena Cortés, Elana E Baltrusaitis, Zainab Aziz, Leo T H Tang, István A Kovács, Engin Özkan

Abstract read
In one paragraph

Article in Cell genomics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed.

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  10. A gene expression atlas of a juvenile nervous system.bioRxiv : the preprint server for biology · 2025
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

10 authors.

Wioletta I NawrockaDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Shouqiang ChengDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Bingjie HaoDepartment of Physics and Astronomy, Northwestern University, Evanston, IL 60208, USA.
Matthew C RosenDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Elena CortésDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Elana E BaltrusaitisDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Zainab AzizDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA.
Leo T H TangDepartment of Biology, University of Vermont, Burlington, VT 05405, USA.
István A KovácsDepartment of Physics and Astronomy, Northwestern University, Evanston, IL 60208, USA; Northwestern Institute on Complex Systems, Northwestern University, Evanston, IL 60208, USA; Department of Engineering Sciences and Applied Mathematics, Northwestern University, Evanston, IL 60208, USA; NSF-Simons National Institute for Theory and Mathematics in Biology, Chicago, IL 60611, USA.
Engin ÖzkanDepartment of Biochemistry and Molecular Biology, the University of Chicago, Chicago, IL 60637, USA; Institute for Neuroscience, the University of Chicago, Chicago, IL 60637, USA; Institute for Biophysical Dynamics, the University of Chicago, Chicago, IL 60637, USA; NSF-Simons National Institute for Theory and Mathematics in Biology, Chicago, IL 60611, USA. Electronic address: eozkan@uchicago.edu.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The nematode Caenorhabditis elegans is a favorable model for studying cell-surface protein interactomes, given its well-defined and stereotyped intercellular contacts. Here, we report an extracellular interactome dataset for C. elegans. Most of these interactions were unknown, despite recent datasets for flies and humans, as our collection contains a larger selection of protein families. We uncover interactions for all four major axon guidance pathways, including ectodomain interactions between three of them. We demonstrate that a protein family, previously known for maintaining axon positioning, functions as secreted binders for insulins and that their overexpression in vivo extends lifespan, consistent with inhibition of insulin signaling. We reveal interactions of cystine-knot proteins with putative signaling receptors, which may extend the study of neurotrophins and growth factors to nematodes. Finally, our dataset constitutes a resource for uncovering the logic of neuronal connectivity, intercellular communication and adhesion, and signaling pathways involved in aging and disease.

Indexed as

Caenorhabditis elegansCaenorhabditis elegans ProteinsSignal TransductionAnimalsAxon GuidanceExtracellular SpaceInsulinCaenorhabditis elegans ProteinsInsulinCaenorhabditis eleganscell-surface receptorextracellular spacehigh-throughput interaction assayprotein-protein interactionssecreted protein

Identifiers

PMID41653916
PMCPMC13174244

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.