Evidence map›Paper›PMID 41656199›Full record

ArticleBMC bioinformatics2026

YamOmics: a comprehensive data resource on yam multi-omics.

Yi Zhao, Xuteng Ye, Jun Cheng, Li Yin, Danyu Shen, Daolong Dou, Jinding Liu

Abstract read
In one paragraph

Article in BMC bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yi Zhao *Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China.
Xuteng Ye *Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China.
Jun Cheng *Academy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China.
Li YinAcademy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China.
Danyu ShenDepartment of Plant Pathology, Nanjing Agricultural University, Nanjing, 210095, China.
Daolong DouAcademy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China.
Jinding LiuAcademy for Advanced Interdisciplinary Studies, Nanjing Agricultural University, Nanjing, 210095, China. liujd@njau.edu.cn.

Funding

the China Agriculture Research System (CARS-21), the National Natural Science Foundation of China (32270208, and 32230089) and the Fundamental Research Funds for the Central Universities KYCXJC2025005 and KYCXJC2024002
6 · The paper itself

Abstract

Yams (Dioscorea spp.) are a highly important class of horticultural crops, serving as a staple food for millions of people in Africa and contributing significantly to food security. They are also widely cultivated in East Asia as medicinal herbs, bringing substantial economic incomes. Diverse omics data play a pivotal role in advancing yam research and breeding. However, these data are often scattered, lacking in systematic organization and analysis, which underscores the need for centralized and comprehensive data management. In view of this, we gathered extensive omics data and developed the Yam Omics Database (YamOmics; https://biotec.njau.edu.cn/yamdb ). The database currently offers a vast and diverse range of omics data, covering genomic, transcriptomic and plastomic data from 41 distinct yam species, along with detailed records of genomic variants from 935 germplasms, and gene expression profiles from 191 samples. Additionally, the database features thorough annotations, encompassing aspects like genome synteny, ortholog groups, signaling pathways, gene families and protein interactions. To support yam basic biology and breeding research, it is also equipped with a suite of user-friendly online tools, including PCR primer design, CRISPR design, expression analysis, enrichment analysis, and phylogenetic inference among Dioscorea accessions tools.

Indexed as

Databases, GeneticDioscoreaGenomicsGene Expression ProfilingGenome, PlantMultiomicsPhylogenyTranscriptome

Identifiers

PMID41656199
PMCPMC12977725

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.