Evidence map›Paper›PMID 41659708›Full record

ArticleBiophysics and physicobiology2025

Schiff base deprotonation and structural changes in a mouse UV-sensitive cone visual pigment revealed by FTIR spectroscopy at 77 K.

Yosuke Mizuno, Sora Arai, Kota Katayama, Hideki Kandori

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Article in Biophysics and physicobiology, 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

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4 · The record

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5 · Who and what money

Authors and funding

4 authors.

Yosuke MizunoDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Aichi 466-8555, Japan.
Sora AraiDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Aichi 466-8555, Japan.
Kota KatayamaDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Aichi 466-8555, Japan.
Hideki KandoriDepartment of Life Science and Applied Chemistry, Nagoya Institute of Technology, Nagoya, Aichi 466-8555, Japan.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

UV-sensitive cone visual pigments are widespread among vertebrates, including birds, fish, and rodents such as mice, and play essential roles in non-primate vision. Unlike visible-light pigments, which contain a protonated retinal Schiff base and absorb at 400-700 nm, UV pigments maintain a deprotonated Schiff base, but how this state is stabilized has remained unresolved. Here, we applied low-temperature FTIR spectroscopy to the mouse UV-sensitive cone visual pigment (MUV), capturing structural changes associated with Batho intermediate formation. Spectral features characteristic of a deprotonated Schiff base were observed in both the initial and Batho states. Importantly, analysis of the Glu113 mutant demonstrated that Glu113 is protonated under these condition. Combined with the analysis of protein-bound water signals, these results indicate that the hydroxyl group of Glu113 serves as a direct hydrogen-bond donor to the deprotonated Schiff base. Moreover, the Glu113 C=O stretching vibration appeared at an unusually low frequency, revealing the presence of an exceptionally strong hydrogen bond with its surrounding protein environment. Comparison with bovine rhodopsin and cone pigments further revealed that MUV binds fewer water molecules near the retinal. This reduction in hydration suggests that a more hydrophobic environment contributes to lowering the Schiff base pKa and stabilizing its deprotonated state. Sequence analyses across species support this view, highlighting conserved nonpolar residues in transmembrane helix 2 (TM2) that likely disrupt hydrogen-bonding networks and promote UV sensitivity. Together, these findings establish MUV as a model for understanding how specific amino acid environments and hydration patterns enable UV vision in vertebrates.

Indexed as

FTIR spectroscopySchiff base deprotonationspectral tuning mechanismUV-sensitive visual pigment

Identifiers

PMID41659708
PMCPMC12875767

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.