Evidence map›Paper›PMID 41677205›Full record

ArticleJournal of chemical theory and computation2026

Automated Discovery of Reactive Events via Hypergraph Mining of Ab Initio Atomistic Simulations.

Alexandra Stan-Bernhardt, Paolo Pellizzoni, Karsten Borgwardt, Christian Ochsenfeld

Abstract read
In one paragraph

Article in Journal of chemical theory and computation, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors.

Alexandra Stan-BernhardtLudwig-Maximilians-Universität München, Chair of Theoretical Chemistry, Department of Chemistry, Butenandtstr. 5, D-81377 München, Germany.ORCID 0000-0003-3542-9993
Paolo PellizzoniMax Planck Institute of Biochemistry, Department of Machine Learning and Systems Biology, Am Klopferspitz 18, D-82152 Martinsried, Germany.
Karsten BorgwardtMax Planck Institute of Biochemistry, Department of Machine Learning and Systems Biology, Am Klopferspitz 18, D-82152 Martinsried, Germany.
Christian OchsenfeldLudwig-Maximilians-Universität München, Chair of Theoretical Chemistry, Department of Chemistry, Butenandtstr. 5, D-81377 München, Germany.ORCID 0000-0002-4189-6558

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The field of generative chemistry and automated exploration of chemical reaction space has gained much interest in recent years as it provides a feasible alternative to performing resource-intensive experiments by enabling important computational insights into new molecular systems. The results are often summarized in reaction networks, which reveal intricate relations between different key reactive events. Although various approaches to explore the available chemical space have been introduced, the information contained in the resulting reaction networks has not been fully exploited so far. We propose an automated workflow for the analysis of chemical reaction networks by applying frequent pattern mining on the corresponding directed hypergraphs to identify frequently occurring reactive patterns across a set of simulations. Furthermore, we identify reactive events that are statistically correlated with given environmental conditions by applying Fisher's exact test and controlling the family-wise error rate to ensure high statistical relevance. Minimum energy paths for frequent and statistically significant patterns are obtained with the molecular double-ended growing string method at ωB97X-3c level of theory. We showcase the pattern-mining-based analysis on the thermally controlled interstellar synthesis of carbamic acid, where we retrieve results in line with experimental data and further investigate the role of water as a protic solvent therein.

Identifiers

PMID41677205
PMCPMC12937057

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.