Evidence mapPaperPMID 41723802Full record

ArticleDiscover oncology2026

Construction of a prognostic model based on protein post-translational modification genes for prediction of immune characteristics and therapeutic response in hepatocellular carcinoma.

Xiangyu Qu, Yigang Zhang, Dayu Liu, Suchen Wang, Yilun Shi, Xiaochi Dan, Yi Tan, Wenrui Wang

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Article in Discover oncology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

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8 authors.

Xiangyu Qu *Department of Clinical Medicine, Bengbu Medical University, Bengbu, China.
Yigang Zhang *Department of Hepatobiliary Surgery, The First Affiliated Hospital of Bengbu Medical University, Bengbu, China.
Dayu Liu *Department of Clinical Medicine, Bengbu Medical University, Bengbu, China.
Suchen WangDepartment of Clinical Medicine, Bengbu Medical University, Bengbu, China.
Yilun ShiDepartment of Medical Imaging, Bengbu Medical University, Bengbu, China.
Xiaochi DanDepartment of Clinical Medicine, Bengbu Medical University, Bengbu, China.
Yi TanDepartment of Hepatobiliary Surgery, The First Affiliated Hospital of Bengbu Medical University, Bengbu, China. doctortanyi2007@126.com.
Wenrui WangAnhui Provincial Key Laboratory of Tumor Evolution and Intelligent Diagnosis and Treatment, Bengbu Medical University, Bengbu, China. wenrui-wang1983@163.com.

Funding

2022 Key Projects of the Education Department of Anhui Province Colleges and Universities 2022AH0514162025 Anhui Provincial Program for Cultivating Discipline (Specialty) Leaders Among Mid-Career Faculty in Higher Education Institutions DTR2025029Provincial High-Level Training Base for Undergraduate Students in Fundamental Disciplines 11202401
6 · The paper itself

Abstract

purposeBy leveraging protein post-translational modification (PTM) genes, we developed a prognostic model for hepatocellular carcinoma (HCC), providing a novel approach for predicting patient outcomes and their response to immunotherapy. This model introduces a potentially valuable tool for improving clinical decision-making in HCC treatment.

methodsPTM-related genes were sourced from the MsigDB database, and key prognostic genes were identified using weighted gene co-expression network analysis (WGCNA) and univariate Cox regression analysis. Prognostic models were constructed through the evaluation of 101 machine learning algorithm combinations, and the model’s predictive accuracy was tested using an independent validation dataset. Additionally, we investigated differences in biological functions, immune status, mutation burden, immunotherapy responsiveness, and chemotherapy sensitivity across distinct risk groups. Finally, the functions of ANAPC7 and SAMD1 in HCC were verified by in vitro experiments.

resultsWe identified 23 prognostic PTM genes, from which prognostic models were constructed using 9 key genes and 101 machine learning combinations. The external validation demonstrated that the models were highly accurate in predicting patient outcomes. Moreover, substantial differences were observed between high-risk and low-risk groups in terms of biological functions, immune cell infiltration, mutation burden, and sensitivity to both immunotherapy and chemotherapy. In vitro results showed that ANAPC7 and SAMD1 were able to promote the proliferation, invasion and migration of HCC.

conclusionOur prognostic model, based on PTM-related genes, successfully predicts both the prognosis of HCC patients and their responsiveness to immunotherapy. This model has the potential to aid in the clinical management of HCC, guiding personalized treatment strategies.

Indexed as

Hepatocellular carcinomaImmune infiltrationImmunotherapyPrognostic modelProtein post-translational modification

Identifiers

PMID41723802
PMCPMC12988925

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.