Evidence map›Paper›PMID 41725298›Full record

ArticlePlant biotechnology journal2026

Enhancing CRISPR/Cas-Mediated Gene Knockout With Short Non-Homologous Oligonucleotides.

Yen Peng Chew, Aron Ferenczi, Marie Dannay, Cristina Ponce-Lilly, Adam Kovac, Dávid Tóth, Szilvia Z Tóth, Attila Molnar

Abstract read
In one paragraph

Article in Plant biotechnology journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yen Peng ChewInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0000-0003-3799-5876
Aron FerencziInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0000-0002-2100-1702
Marie DannayInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0009-0000-2807-4966
Cristina Ponce-LillyInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0009-0006-1976-503X
Adam KovacInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0000-0003-0698-113X
Dávid TóthInstitute of Plant Biology, HUN-REN Biological Research Centre, Szeged, Hungary.ORCID https://orcid.org/0009-0008-2131-7898
Szilvia Z TóthInstitute of Plant Biology, HUN-REN Biological Research Centre, Szeged, Hungary.ORCID https://orcid.org/0000-0003-3419-829X
Attila MolnarInstitute of Molecular Plant Sciences, University of Edinburgh, Edinburgh, UK.ORCID https://orcid.org/0000-0002-1044-6327

Funding

Biotechnology and Biological Sciences Research Council BB/W003538/1Darwin Trust of EdinburghUK Research and Innovation
6 · The paper itself

Abstract

Chlamydomonas reinhardtii is a model green microalga that has great industrial potential as a sustainable bio-factory for recombinant protein and high-value chemical production. Efficient genome editing tools are required to redesign this organism for synthetic biology applications. CRISPR-Cas editing technologies have already been adapted for gene knockout, transgene knock-in, and precise gene editing in C. reinhardtii. However, the efficacy of CRISPR/Cas-mediated gene knockout (KO) is low, which hampers pathway engineering and functional genomic studies. Here we report that co-delivery of CRISPR-Cas gene editing reagents with short double-stranded non-homologous oligodeoxynucleotides (dsNHO) increases gene knockout efficacy up to 100-fold in C. reinhardtii. This phenomenon, referred to as non-homologous oligonucleotide enhancement (NOE), is heavily affected by the length, structure, and chemical modifications of dsNHO, and is largely mediated by the DNA double-stranded break sensor KU70/80 (KU) heterodimer in a Cas nuclease-, locus-, and strain-independent manner. Our data suggest that dsNHOs disrupt the cell's double-stranded break (DSB) sensing pathways, consequently shifting the balance of DNA repair from canonical non-homologous end joining (c-NHEJ) towards the more error-prone, microhomology-mediated end joining (MMEJ), which could be harnessed as a strategy for improving gene KO efficiency in Chlamydomonas and beyond.

Indexed as

Chlamydomonas reinhardtiiCRISPR-Cas SystemsGene Knockout TechniquesOligonucleotidesGene EditingKu AutoantigenKu AutoantigenOligonucleotidesChlamydomonasCRISPR/Casgene knockoutKU70/80 heterodimernon‐homologous oligonucleotide enhancement

Identifiers

PMID41725298
PMCPMC13205664

What Socratic holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.