Evidence map›Paper›PMID 41756296›Full record

ArticleFrontiers in immunology2026

Identification of lactylation and its hub genes in contributing immune activation and renal allograft fibrosis by integrative bioinformatics and machine learning.

Feifei Yuan, Jiewu Huang, Dantong Huang, Kexin Li, Shan Zhou, Lili Zhou

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Article in Frontiers in immunology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

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2citing papers in PubMed
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1 · What the graph read from it

What it found

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2 · The registry

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3 · Its place in the literature

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2 citing papers in PubMed.

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4 · The record

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5 · Who and what money

Authors and funding

6 authors.

Feifei YuanDivision of Nephrology, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Jiewu HuangDivision of Nephrology, Nanfang Hospital, Southern Medical University, Guangzhou, China.
Dantong HuangCentral Laboratory, The Fifth Affiliated Hospital, Southern Medical University, Guangzhou, Guangdong, China.
Kexin LiCentral Laboratory, The Fifth Affiliated Hospital, Southern Medical University, Guangzhou, Guangdong, China.
Shan ZhouCentral Laboratory, The Fifth Affiliated Hospital, Southern Medical University, Guangzhou, Guangdong, China.
Lili ZhouDivision of Nephrology, Nanfang Hospital, Southern Medical University, Guangzhou, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Background: Late graft loss due to chronic renal allograft fibrosis remains a major challenge after kidney transplantation. Excessive immune-cell activation is a key driver of allograft fibrosis; however, the underlying mechanisms remain incompletely understood. Recent studies have implicated lactylation, a post-translational protein modification derived from lactate, in immune activation. Nonetheless, the role of lactylation in renal allograft fibrosis has not been systematically explored. Methods: Transcriptomic datasets from kidney transplant recipients with and without interstitial fibrosis/tubular atrophy (IFTA) were obtained from the GEO database. Differentially expressed genes were intersected with lactylation-related genes (LRGs) to identify differentially expressed LRGs (DELRGs). Functional enrichment analyses were performed to explore associated biological processes and pathways. Weighted gene co-expression network analysis (WGCNA) combined with multiple machine-learning algorithms was used to screen for hub genes. A lactylation-related risk score (LRS) was constructed and validated across independent cohorts, and its predictive performance was evaluated by receiver operating characteristic (ROC) analysis. Single-nucleus RNA sequencing (snRNA-seq) data from allograft biopsies (GSE195718) were processed with Seurat and Harmony for clustering and annotation; cell type-specific hub LRG expression and lactylation scores were profiled. Two murine renal fibrosis models were established to validate the expression of hub genes and to assess their associations with immune-cell infiltration. Results: We identified five hub LRGs- Conclusion: This study identified five lactylation-related hub genes that are closely associated with immune-cell infiltration and exhibit strong predictive performance, suggesting their potential as diagnostic biomarkers and therapeutic targets in renal allograft fibrosis.

Indexed as

KidneyKidney TransplantationMachine LearningProtein Processing, Post-TranslationalAllograftsAnimalsComputational BiologyFibrosisGene Expression ProfilingGene Regulatory NetworksGraft RejectionHumansMiceTranscriptomebioinformaticsimmune infiltrationkidney transplantlactylationrenal allograft fibrosis

Identifiers

PMID41756296
PMCPMC12932934

What Socratic holds

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.