Evidence map›Paper›PMID 41770024›Full record

ArticleGigaScience2026

Stereo-cell deciphers the spatial and functional heterogeneity of polyploid hepatocytes.

Yongqing Yang, Jiahui Luo, Yier Cai, Pengcheng Guo, Qiang Guo, Hong Wu, Longqi Liu, Shijie Hao

Abstract read
In one paragraph

Article in GigaScience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Yongqing YangCollege of Life Sciences, University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing 100049, China.
Jiahui LuoBGI Research, 203 Zhenzhong Road, Xihu District, Hangzhou 310030, China.
Yier CaiGuangdong Country Garden School, 101 Country Garden Road, Shunde District, Foshan 528311, China.
Pengcheng GuoBGI Research , 203 Zhenzhong Road, Xihu District, Hangzhou 310030, China.
Qiang GuoBGI Research , 203 Zhenzhong Road, Xihu District, Hangzhou 310030, China.
Hong WuCollege of Life Sciences, University of Chinese Academy of Sciences, 19A Yuquan Road, Shijingshan District, Beijing 100049, China.
Longqi LiuBGI Research , 203 Zhenzhong Road, Xihu District, Hangzhou 310030, China.
Shijie HaoBGI Research , 203 Zhenzhong Road, Xihu District, Hangzhou 310030, China.ORCID 0000-0001-9845-3101

Funding

National Natural Science Foundation of China 32500590National Postdoctoral Program for Innovative Talents BX20250145Zhejiang Provincial Natural Science Foundation LMS26C060001
6 · The paper itself

Abstract

A characteristic feature of the liver is the presence of numerous polyploid hepatocytes. However, the functional distinctions among diploid, tetraploid, and octoploid hepatocytes remain poorly understood. In this study, we employed the spatially resolved single-cell sequencing technology, Stereo-cell, to dissect the transcriptomic and functional heterogeneity across hepatocyte ploidy subtypes. We detail the development of Stereo-cell imaging-based ploidy identification (SCIPI), a technical pipeline that integrates bright-field cell contour recognition, DAPI-based nuclear area and number quantification, and UMI-barcoded single-cell transcriptomics. This approach enables precise identification of 6 core hepatocyte subtypes: mononucleated diploid (2n×1), mononucleated tetraploid (4n×1), binucleated tetraploid (2n×2), mononucleated octoploid (8n×1), binucleated octoploid (4n×2), and binucleated hexadecaploid (8n×2) hepatocytes. Single-cell transcriptomic analysis based on ploidy annotation revealed that gene expression levels positively with increasing ploidy and nuclear number. Metabolic pathway-associated genes were significantly upregulated in polyploid cells, suggesting that cellular polyploidization enhances the metabolic activity of hepatocytes. Furthermore, this SCIPI strategy is broadly applicable to the study of various polyploid tissues, offering a novel and versatile framework for innovative ploidy-resolved research across diverse biological researches.

Indexed as

HepatocytesPolyploidySingle-Cell AnalysisAnimalsGene Expression ProfilingMicePloidiesSingle-Cell Gene Expression AnalysisTranscriptomehepatocyte metabolismHepatocyte ploidyimaging-based ploidy identificationspatially resolved single-cell sequencing

Identifiers

PMID41770024
PMCPMC13100898

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.