Evidence map›Paper›PMID 41787265›Full record

ArticleBMC molecular and cell biology2026

Splicing isoforms associated with TGFβ-induced myofibroblast activation.

Opeoluwa Alli-Oke, Danny Bergeron, Fiona Kessai, Philippe Thibault, Mathieu Durand, Jean-Philippe Brosseau

Abstract read
In one paragraph

Article in BMC molecular and cell biology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Opeoluwa Alli-OkeDepartment of Biochemistry and Functional Genomic, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada.
Danny BergeronPlateforme RNomique / RNomics Plateform, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada.
Fiona KessaiDepartment of Biochemistry and Functional Genomic, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada.
Philippe ThibaultDepartment of Biochemistry and Functional Genomic, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada.
Mathieu DurandPlateforme RNomique / RNomics Plateform, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada.
Jean-Philippe BrosseauDepartment of Biochemistry and Functional Genomic, Faculté de médecine et des sciences de la santé (FMSS), Université de Sherbrooke, Sherbrooke, QC, J1E4K8, Canada. Jean-Philippe.Brosseau@USherbrooke.ca.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundMyofibroblast differentiation is a key process in developmental biology and involved in numerous physiopathology. The gene expression program orchestrating fibroblast to myofibroblast differentiation, as well as its recapitulation by TGFβ stimulation in vitro, is relatively well characterized. Intriguingly, it is known that the splicing isoform EDA+FN1 is a marker and driver of myofibroblast differentiation, but the alternative splicing landscape of myofibroblast is unknown.

resultsHere, we performed a high-throughput transcriptomic approach by RNA-Seq in a primary skin fibroblast line and uncover more than 250 splicing isoforms associated with TGFβ-induced myofibroblasts using two different bioinformatic pipelines. This splicing profile highlights a distinct layer of regulation when compared to the global gene expression profile of myofibroblasts. A 5 alternative splicing event (ASE) signature [ACTN1-19 A/19B; COL5A1-64 A/64B; COL6A3 exon 4; FLNA exon 30 and TPM1-6a/6b] was further validated by ddPCR and AS-PCR and retrieved in publicly available RNA-Seq datasets describing other TGFβ-stimulated lung and skin fibroblasts. Surprisingly, TGFβ does not induce an EDA+FN1 splicing shift, although it stimulates global fibronectin expression.

conclusionsThus, we conclude that the 5 ASEs signature may be used as putative universal myofibroblast markers and be of functional significance to myofibroblast formation and biology.

Indexed as

Alternative SplicingMyofibroblastsTransforming Growth Factor betaCell DifferentiationCell LineFibroblastsFibronectinsGene Expression ProfilingHumansProtein IsoformsFibronectinsProtein IsoformsTransforming Growth Factor betaAlternative splicingGM05386MyofibroblastRNAseqTGFβ

Identifiers

PMID41787265
PMCPMC13077938

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.