Evidence map›Paper›PMID 41857009›Full record

ArticleNature communications2026

StrucGAP: a modular, streamlined and traceable data mining platform for structural and site-specific glycoproteomics.

Muyao Yang, Yongqi Wu, Zhida Zhang, Yongchao Xu, Tianjia Lei, Xiaohan Wang, Zhehui Jin, Ke Hou, Yinli Cai, Shisheng Sun

Abstract read
In one paragraph

Article in Nature communications, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors.

Muyao Yang *Laboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Yongqi Wu *Laboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Zhida Zhang *Laboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Yongchao XuLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Tianjia LeiLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Xiaohan WangLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Zhehui JinLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Ke HouLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Yinli CaiLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China.
Shisheng SunLaboratory for Disease Glycoproteomics, College of Life Sciences, Northwest University, Xi'an, P. R. China. suns@nwu.edu.cn.ORCID 0000-0002-7242-7164

Funding

National Natural Science Foundation of ChinaNatural Science Foundation of Shaanxi ProvinceShaanxi Fundamental Science Research Project for Chemistry and Biology
6 · The paper itself

Abstract

The rapidly developing search engines for glycopeptide identification and accumulated high-resolution glycoproteomic data underscore the need for robust downstream data mining platforms towards subsequently functional and mechanistic studies. Here, we introduce StrucGAP, a Structural Glycoproteomics Analysis Platform for scalable downstream data mining of site-specific N-glycoproteomics. It integrates modules for data quality control, overall glycan structural characterization, altered glycan feature extraction, functional annotation, as well as upstream regulation and downstream networks. Its visualization and insight-tracking functionalities distill interpretation across hundreds of outputs, uniquely enabling to generate chart-based analysis reports and extract key glycosylation insights-capabilities rarely found in existing omics tools. Applying StrucGAP to an uncharacterized aging mouse uterus dataset reveals bidirectional regulation of core-fucosylation, and progressive, coordinated enrichment of glycans featuring sialylation via Neu5Ac, Lewis epitopes, and hybrid glycans along glycosylation dynamics. These changes are functionally linked to adhesion and remodeling, demonstrating StrucGAP's ability to distill critical glycosylation insights from multi-dimensional information of structural N-glycoproteome datasets.

Indexed as

Data MiningGlycopeptidesGlycoproteinsProteomicsAnimalsFemaleGlycosylationMicePolysaccharidesUterusGlycopeptidesGlycoproteinsPolysaccharides

Identifiers

PMID41857009
PMCPMC13003015

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.