Evidence map›Paper›PMID 41857393›Full record

ArticleNature neuroscience2026

Single-nucleus epigenomic profiling of the adult human central nervous system unveils epigenetic memory of developmental programs.

Mukund Kabbe, Eneritz Agirre, Karl E Carlström, Özge Dumral, Yuk Kit Lor, Fabio Baldivia Pohl, Nicolas Ruffin, David van Bruggen, Mandy Meijer, Luise A Seeker and 12 more

Abstract read
In one paragraph

Article in Nature neuroscience, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed.

  1. Review
  2. Article
  3. Review
  4. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Mukund KabbeLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.
Eneritz AgirreLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-5012-0305
Karl E CarlströmLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3001-2403
Özge DumralLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-9980-2702
Yuk Kit LorLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.
Fabio Baldivia PohlLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-1695-4936
Nicolas RuffinDepartment of Clinical Neuroscience, Centre for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.ORCID http://orcid.org/0000-0002-3698-5505
David van BruggenLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.
Mandy MeijerLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden.
Luise A SeekerCentre for Regenerative Medicine, Institute of Regeneration and Repair, University of Edinburgh, Edinburgh, UK.
Nadine Bestard-CucheCentre for Regenerative Medicine, Institute of Regeneration and Repair, University of Edinburgh, Edinburgh, UK.
Alex R LedererLaboratory of Brain Development and Biological Data Science, School of Life Sciences, Ecole Polytechnique Federale de Lausanne, Lausanne, Switzerland.ORCID http://orcid.org/0000-0001-6381-5088
Jilin ZhangMing Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong, China.
Virpi AholaMing Wai Lau Centre for Reparative Medicine, Karolinska Institutet, Hong Kong, China.
Steven A GoldmanCentre for Translational Neuromedicine, University of Copenhagen, Copenhagen, Denmark.
Erik EdströmDepartment of Clinical Neuroscience, Karolinska Institutet, Solna, Sweden.
Lisa ArvidssonDepartment of Women's and Children's Health, Karolinska Institutet, Solna, Sweden.ORCID http://orcid.org/0000-0003-2129-5357
Tiago Holm MoreiraDepartment of Clinical Neuroscience, Karolinska Institutet, Solna, Sweden.
Marek BartosovicDepartment of Biochemistry and Biophysics, Stockholm University, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-2057-6050
Maja JagodicDepartment of Clinical Neuroscience, Centre for Molecular Medicine, Karolinska Institutet, Karolinska University Hospital, Stockholm, Sweden.ORCID http://orcid.org/0000-0003-0756-889X
Anna WilliamsCentre for Regenerative Medicine, Institute of Regeneration and Repair, University of Edinburgh, Edinburgh, UK.ORCID http://orcid.org/0000-0002-6329-382X
Gonçalo Castelo-BrancoLaboratory of Molecular Neurobiology, Department of Medical Biochemistry and Biophysics, Science for Life Laboratory, Karolinska Institutet, Stockholm, Sweden. goncalo.castelo-branco@ki.se.ORCID http://orcid.org/0000-0003-2247-9393

Funding

EC | EU Framework Programme for Research and Innovation H2020 | H2020 Priority Excellent Science | H2020 European Research Council (H2020 Excellent Science - European Research Council) 101096064Hjärnfonden (Swedish Brain Foundation) FO2023-0032Knut och Alice Wallenbergs Stiftelse (Knut and Alice Wallenberg Foundation) 2019-0089Vetenskapsrådet (Swedish Research Council) 2023-00324
6 · The paper itself

Abstract

Neural cells in the adult human central nervous system (CNS) display extensive transcriptional heterogeneity. How different layers of epigenetic regulation underpin this heterogeneity is poorly understood. Here we profile, at the single-nuclei epigenomic level, distinct regions of the adult human CNS, for chromatin accessibility and simultaneously for the histone modifications H3K27me3 and H3K27ac. We unveil a putative SOX10 enhancer and primed chromatin signatures at HOX loci in spinal-cord-derived human oligodendroglia (OLG) and astrocytes, but not microglia. These signatures in adult OLG were reminiscent of developmental profiles but were decoupled from robust gene expression. Moreover, using high-resolution Micro-C, we show that induced pluripotent stem-cell-derived human OLGs exhibit a HOX chromatin architecture compatible with the primed chromatin in adult OLGs, bearing a strong resemblance not only to OLG developmental architecture but also to high-grade pontine gliomas. Thus, epigenetic memory from developmental states in adult OLG not only enables them to promptly transcribe Hox family genes during regeneration but also makes them susceptible to gliomagenesis.

Indexed as

Cell NucleusCentral Nervous SystemEpigenesis, GeneticOligodendrogliaAdultAstrocytesChromatinEpigenetic MemoryEpigenomicsHistonesHumansSpinal CordChromatinHistones

Identifiers

PMID41857393
PMCPMC13061643

What Socratic holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.