Evidence map›Paper›PMID 41874284›Full record

ArticleGenome biology and evolution2026

Signatures of Innovation and Selection in the Extremotolerant Yeast Kluyveromyces marxianus.

Kaylee E Christensen, Aniliese Deal, Jun-Ting Johnson Wang, Abel Duarte, Judith L Edwards, Jasmine L N Goodman, Zhenzhen Ma, Sasha I Padilla, Edyta Szewczyk, Catherine Rha and 1 more

Abstract read
In one paragraph

Article in Genome biology and evolution, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Evolutionary insights into an ancient fungal transition from land to sea.bioRxiv : the preprint server for biology · 2026
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

11 authors.

Kaylee E ChristensenDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0006-0058-4319
Aniliese DealDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-3041-3653
Jun-Ting Johnson WangDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0007-8600-8036
Abel DuarteDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.
Judith L EdwardsDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0007-5843-4855
Jasmine L N GoodmanDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0005-9819-1400
Zhenzhen MaDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0007-0107-7463
Sasha I PadillaDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0005-7774-693X
Edyta SzewczykDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-2054-5855
Catherine RhaDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0009-0008-5791-4256
Rachel B BremDepartment of Plant and Microbial Biology, University of California, Berkeley, Berkeley, CA 94720, USA.ORCID 0000-0002-8587-9434

Funding

Mapping deep evolutionary divergences in cellular models of stress responseR01GM120430 · NIGMS · UNIVERSITY OF CALIFORNIA BERKELEY · PI BREM, RACHEL BETH · 2017 to 2025
$3.9M
NIGMS NIH HHS R01 GM120430
6 · The paper itself

Abstract

Organisms specialized to extreme environments can be the product of millions of years of evolutionary engineering and refinement. The underlying genetics can be quite distinct from those operating at earlier stages of trait innovation. In this work, we have developed the multistress-resistant yeast Kluyveromyces marxianus, which diverged from its closest relative >20 million years ago, as a model for interspecies comparative biology and genomics. In growth assays of the Kluyveromyces genus, we found that K. marxianus exhibited unique tolerance of high heat and a subset of chemical stress conditions. We then generated and analyzed omic profiles from across the genus to find molecular features associated with-and potentially causal for-K. marxianus traits. Expression profiling revealed divergent lipid processing and membrane transport programs in K. marxianus, borne out in changes in lipid utilization in experimental assays. Sequence analyses found robust evidence for expansions in gene families in the K. marxianus genome, most notably among transmembrane transporters and in metabolic enzymes. In molecular-evolution tests, we identified adaptive protein variants throughout the K. marxianus genome, among which plasma membrane transporters were over-represented. These data enable a model of the molecular mechanisms and evolutionary pressures underlying K. marxianus traits, including adaptive changes to transporters, lipid processing, and membrane functions mediating stress resistance.

Indexed as

Evolution, MolecularKluyveromycesSelection, GeneticFungal ProteinsGenome, FungalLipid MetabolismThermotoleranceFungal Proteinscell membraneevolutionfungistress tolerancetrait variation

Identifiers

PMID41874284
PMCPMC13011806

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.