Evidence map›Paper›PMID 41884166›Full record

ArticleJournal of inflammation research2026

Integrating Single-Cell and Microarray Data to Explore the Role of Autophagy-Related Gene Atg7 in Osteoporosis.

Zhiyong Lin, Yue Cheng, Qianwen Tang, Hao Zheng, Huanji Li, Yongyun Lian

Abstract read
In one paragraph

Article in Journal of inflammation research, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Zhiyong Lin *Department of Orthopedics, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.
Yue Cheng *Department of Cardiovascular Surgery, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.ORCID 0009-0003-5787-0998
Qianwen TangDepartment of Orthopedics, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.
Hao ZhengDepartment of Orthopedics, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.
Huanji LiDepartment of Orthopedics, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.
Yongyun LianDepartment of Orthopedics, Fourth Affiliated Hospital of Harbin Medical University, Harbin, People's Republic of China.ORCID 0000-0002-3609-7639

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: Osteoporosis is a metabolic bone disorder characterized by reduced bone mass, impaired microarchitecture, and diminished bone strength, resulting in a significantly elevated risk of fractures. It is especially prevalent among older adults, particularly postmenopausal females, and profoundly impacts quality of life. In this study, we integrated osteoporosis-related single-cell RNA sequencing (scRNA-seq) and microarray datasets, to identify the autophagy-related gene Methods: By integrating single-cell transcriptomics with chip data, autophagy-related genes associated with osteoporosis were screened, and cell-cell interactions and developmental trajectories were explored using cell communication and pseudotime analysis. An ovariectomized (OVX) mouse model was established, and verification was performed using micro-CT and immunohistochemistry techniques. Dual-labeled three-color fluorescence technology was employed to further validate the pseudotime analysis results. Additionally, qRT-PCR, Western blot, and other experiments were conducted to assess the expression levels of related genes. Further, ATG7 was overexpressed in OVX mouse BMSCs to investigate its impact on the autophagy process and osteogenic marker proteins. Results: Pseudotime trajectory analysis revealed a strong link between ATG7 expression and the EYA1 mesenchymal stem cell (MSC) subpopulation. The proportion of EYA1-positive cells and ATG7 expression decreased as osteoporosis progressed.MSCs isolated from OVX mice exhibited diminished expression of autophagy- and osteogenesis-related marker proteins compared to those from normal mice. ATG7 overexpression effectively restored the expression levels of these markers, suggesting its functional role in promoting autophagy and osteogenesis under OP conditions. Conclusion: These findings highlight ATG7 as a critical regulator of MSC differentiation, suggesting that it may serve as a promising therapeutic target for osteoporosis. Modulation of autophagy pathways through ATG7 holds potential for future clinical applications in osteoporosis prevention and treatment.

Indexed as

autophagymicroarray dataosteoporosispseudotime trajectorysingle-cell analysis

Identifiers

PMID41884166
PMCPMC13011978

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.