Evidence map›Paper›PMID 41890980›Full record

ArticleOne health (Amsterdam, Netherlands)2026

Dual-platform metagenomic surveillance distinguishes pathogen and resistome hotspots across agricultural and mixed-use watersheds.

Yichao Shi, Haley Sanderson, Jiacheng Chuan, Izhar U H Khan, Mark Sunohara, Emilia Craiovan, David R Lapen, Moussa Diarra, Wen Chen

Abstract read
In one paragraph

Article in One health (Amsterdam, Netherlands), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Yichao ShiOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.
Haley SandersonBiological Informatics Center of Excellence, Information Systems Branch, AAFC, 107 Science Pl, Saskatoon, SK S7N 5E2, Canada.
Jiacheng ChuanThe Charlottetown Laboratory, Canadian Food & Inspection Agency (CFIA), 93 Mt Edward Rd, Charlottetown, PEI C1A 5T1, Canada.
Izhar U H KhanOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.
Mark SunoharaOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.
Emilia CraiovanOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.
David R LapenOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.
Moussa DiarraGuelph Research and Development Centre, AAFC, 93 Stone Rd W, Guelph, ON N1G 5C9, Canada.
Wen ChenOttawa Research & Development Centre, Science & Technology Branch, Agriculture & Agri-Food Canada (AAFC), 960 Carling Avenue, Ottawa, ON K1A 0C6, Canada.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Freshwater systems embedded in agricultural landscapes serve as dynamic reservoirs and conduits for fecal-associated microbes, zoonotic pathogens, and antimicrobial resistance (ARG) and virulence factor (VF) genes. Yet factors that govern their densities and diversity remain a research challenge. From 2016 to 2021, we conducted a longitudinal water surveillance in an agriculturally dominated river basin in eastern Ontario, Canada; characterizing fecal-associated bacterial communities using 16S rRNA gene amplicon and shotgun metagenomic sequencing. Agricultural drainage ditches consistently harbored higher fecal-associated bacterial diversity with pronounced seasonal shifts; i.e., higher levels during larger flow periods in spring and fall. Elevated discharge was associated with enrichment of genera containing zoonotic or opportunistic pathogens, such as those in

Indexed as

agricultural watershedsantimicrobial resistanceFreshwater microbiomemetagenomic sequencingspathogens

Identifiers

PMID41890980
PMCPMC13015239

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.