Evidence map›Paper›PMID 41892921›Full record

ArticleJournal of imaging2026

ClearScope: A Fully Integrated Light-Sheet Theta Microscope for Sub-Micron-Resolution Imaging Without Lateral Size Constraints.

Matthew G Fay, Peter J Lang, David S Denu, Nathan J O'Connor, Benjamin Haydock, Jeffrey Blaisdell, Nicolas Roussel, Alissa Wilson, Sage R Aronson, Veronica Pessino and 7 more

Abstract read
In one paragraph

Article in Journal of imaging, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. A preprocessing toolbox for 2-photon subcellular calcium imaging.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Matthew G FayMBF Bioscience, Williston, VT 05495, USA.
Peter J LangMBF Bioscience, Williston, VT 05495, USA.ORCID 0009-0007-1876-4104
David S DenuMBF Bioscience, Williston, VT 05495, USA.
Nathan J O'ConnorMBF Bioscience, Williston, VT 05495, USA.ORCID 0009-0000-5928-8692
Benjamin HaydockMBF Bioscience, Williston, VT 05495, USA.
Jeffrey BlaisdellMBF Bioscience, Williston, VT 05495, USA.
Nicolas RousselMBF Bioscience, Williston, VT 05495, USA.
Alissa WilsonMBF Bioscience, Williston, VT 05495, USA.
Sage R AronsonMBF Bioscience, Williston, VT 05495, USA.
Veronica PessinoMBF Bioscience, Williston, VT 05495, USA.
Paul J AngstmanMBF Bioscience, Williston, VT 05495, USA.
Cheng GongDepartment of Biomedical Engineering, Columbia University, New York, NY 10027, USA.ORCID 0000-0002-0026-2006
Tanvi ButolaNeuroscience Institute, New York University Langone Health, New York, NY 10016, USA.
Orrin DevinskyDepartment of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY 10016, USA.
Jayeeta BasuNeuroscience Institute, New York University Langone Health, New York, NY 10016, USA.ORCID 0000-0002-7559-0936
Raju TomerDepartment of Biomedical Engineering, Columbia University, New York, NY 10027, USA.
Jacob R GlaserMBF Bioscience, Williston, VT 05495, USA.ORCID 0000-0003-4463-207X

Funding

Project-005UL1TR001445 · NCATS · NEW YORK UNIVERSITY SCHOOL OF MEDICINE · PI BREDELLA, MIRIAM ANTOINETTE, HOCHMAN, JUDITH S · 2015 to 2025
$103.5M
ClearScopeR44MH116827 · NIMH · MICROBRIGHTFIELD, LLC · PI GLASER, JACOB R · 2018 to 2022
$4.5M
American Epilepsy Society Junior Investigator AwardNational Institute of Mental Health of the National Institutes of Health R44MH116827NCATS NIH HHS UL1 TR001445NIMH NIH HHS R44 MH116827NYU CTSI Pilot NIH/NCATS UL1TR001445Parekh Center for Interdisciplinary Neurology Pilot Research Grant
6 · The paper itself

Abstract

Three-dimensional (3D) ex vivo imaging of cleared tissue from intact brains from animal models, human brain surgical specimens, and large postmortem human and non-human primate brain specimens is essential for understanding physiological neural connectivity and pathological alterations underlying neurological and neuropsychiatric disorders. Contemporary light-sheet microscopy enables rapid, high-resolution imaging of large, cleared samples but is limited by the orthogonal arrangement of illumination and detection optics, which constrains specimen size. Light-sheet theta microscopy (LSTM) overcomes this limitation by employing two oblique illumination paths while maintaining a perpendicular detection geometry. Here, we report the development of a next-generation, fully integrated and user-friendly LSTM system that enables uniform subcellular-resolution imaging (with subcellular resolution determined by the lateral performance of the system) throughout large specimens without constraining lateral (XY) dimensions. The system provides a seamless workflow encompassing image acquisition, data storage, pre- and post-processing, enhancement and quantitative analysis. Performance is demonstrated by high-resolution 3D imaging of intact mouse brains and human brain samples, including complete downstream analyses such as digital neuron tracing, vascular reconstruction and design-based stereological analysis. This enhanced and accessible LSTM implementation enables rapid quantitative mapping of molecular and cellular features in very large biological specimens.

Indexed as

connectomicslight-sheet microscopylight-sheet theta microscopyneuroscience

Identifiers

PMID41892921
PMCPMC13027753

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.