Evidence map›Paper›PMID 41912700›Full record

ArticleNature biomedical engineering2026

Empowering AI data scientists using a multi-agent LLM framework with self-evolving capabilities for autonomous, tool-aware biomedical data analyses.

Dechao Bu, Jingbo Sun, Kun Li, Zihao He, Wei Huang, Jinlin Hu, Shanshan Zhang, Shuangshuang Lei, Peipei Huo, Zhihao Wang and 12 more

Abstract read
PubMed Publisher
In one paragraph

Article in Nature biomedical engineering, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
  4. Article
  5. SpikeLab: Agentic tools for spike data analysis.bioRxiv : the preprint server for biology · 2026
    Article
  6. Review
  7. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

22 authors.

Dechao Bu *Research Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-8833-5432
Jingbo Sun *Research Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0008-9257-3995
Kun Li *AI Cross Disciplinary Research Institute and Faculty of Medicine, Macau University of Science and Technology, Macau, China.
Zihao HeNingbo No.2 Hospital, Ningbo, China.
Wei HuangResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.
Jinlin HuResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.
Shanshan ZhangLuoyang Institute of Information Technology Industries, Luoyang, China.ORCID http://orcid.org/0009-0009-4050-4063
Shuangshuang LeiBeijing University of Chinese Medicine, Beijing, China.
Peipei HuoLuoyang Institute of Information Technology Industries, Luoyang, China.
Zhihao WangLuoyang Institute of Information Technology Industries, Luoyang, China.
Sheng WangResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0009-0009-0537-905X
Tao WangResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.
Kai GaoNingbo No.2 Hospital, Ningbo, China.
Yang WuResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0001-6547-9524
Lianhe ZhaoResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China.ORCID http://orcid.org/0000-0002-7736-2443
Kai WangDepartment of Big Data and Biomedical Al, College of Future Technology, Peking University and Peking-Tsinghua Center for Life Sciences, Beijing, China.ORCID http://orcid.org/0009-0001-0354-1772
Gen LiAI Cross Disciplinary Research Institute and Faculty of Medicine, Macau University of Science and Technology, Macau, China.
Huan SongWest China Biomedical Big Data Center, West China Hospital, Sichuan University, Chengdu, China.
Yang JinUnion Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan, China.
Kang ZhangAI Cross Disciplinary Research Institute and Faculty of Medicine, Macau University of Science and Technology, Macau, China. kang.zhang@gmail.com.ORCID http://orcid.org/0000-0002-4549-1697
Runsheng ChenKey Laboratory of RNA Biology, Center for Big Data Research in Health, Institute of Biophysics, Chinese Academy of Sciences, Beijing, China. crs@ibp.ac.cn.ORCID http://orcid.org/0000-0002-0550-1731
Yi ZhaoResearch Center for Ubiquitous Computing Systems, Institute of Computing Technology, Chinese Academy of Sciences, Beijing, China. biozy@ict.ac.cn.ORCID http://orcid.org/0000-0001-6046-8420

Funding

Department of Science and Technology, Hubei Provincial People's Government (Hubei Provincial Department of Science and Technology) 2022BCA016Department of Science and Technology, Hubei Provincial People's Government (Hubei Provincial Department of Science and Technology) 2023BCB146National Natural Science Foundation of China (National Science Foundation of China) 32341019National Natural Science Foundation of China (National Science Foundation of China) 32570778National Natural Science Foundation of China (National Science Foundation of China) 92474204National Natural Science Foundation of China (National Science Foundation of China) W2431057National Science Foundation of China | Major Research Plan 2022YFF1203303Natural Science Foundation of Beijing Municipality (Beijing Natural Science Foundation) L222007
6 · The paper itself

Abstract

Artificial intelligence agents are emerging as powerful applications of large language models (LLMs), automating complex tasks and enabling scientific data exploration. However, their use in biomedical data analysis remains limited by the difficulty of handling specialized tools and multistep reasoning. Here we introduce BioMedAgent, a self-evolving LLM multi-agent framework, which learns to use diverse bioinformatics tools and chain them into executable workflows through interactive exploration and memory retrieval algorithms. It allows biomedical users to initiate tasks using natural language, without requiring computational expertise. Evaluated on our newly released BioMed-AQA benchmark comprising 327 biomedical data tasks, BioMedAgent achieved a 77% success rate, surpassing other LLM agents, and generalized robustly to the external BixBench dataset. Beyond benchmarks, it autonomously performs cross-omics analysis, machine-learning modelling and pathology image segmentation, highlighting its potential to advance biomedical research and extend to other scientific domains requiring complex tool integration and multistep reasoning.

Identifiers

PMID41912700

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.