Evidence map›Paper›PMID 41918190›Full record

ReviewComprehensive reviews in food science and food safety2026

Gap Analysis of Metabolic Conversions of Off-Flavors and Antinutrients in Plant-Based Substrates.

Robin I Kuijpers, Isabel O de Moya Clark, Tomás Cavaco, Vivian Nemanič, Beatrice Tagliabue, Ainhoa Valero-Abad, Wiebe M Wennekers, Mengqiu Zhang, Koen Van Zwet, Sanne Abeln and 7 more

Erratum issuedAbstract readReview
In one paragraph

Review in Comprehensive reviews in food science and food safety, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors.

Robin I KuijpersSystems Biology Lab, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Isabel O de Moya ClarkDepartment of Computer Science, VU Bioinformatics Group, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Tomás CavacoSystems Biology Lab, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Vivian NemaničFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Beatrice TagliabueBiocatalysis Section, Department of Biotechnology, Delft University of Technology, Delft, the Netherlands.
Ainhoa Valero-AbadFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Wiebe M WennekersFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Mengqiu ZhangChemistry and Pharmaceutical Sciences, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Koen Van ZwetFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Sanne AbelnDepartment of Computer Science, AI Technology for Life, Universiteit Utrecht, Utrecht, the Netherlands.
Sofia MocoChemistry and Pharmaceutical Sciences, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Caroline E PaulBiocatalysis Section, Department of Biotechnology, Delft University of Technology, Delft, the Netherlands.
Halima MouhibDepartment of Computer Science, VU Bioinformatics Group, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Richard A NotebaartFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Eddy J SmidFood Microbiology, Wageningen University & Research, Wageningen, the Netherlands.
Bas TeusinkSystems Biology Lab, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.
Herwig BachmannSystems Biology Lab, A-LIFE, AIMMS, Vrije Universiteit Amsterdam, Amsterdam, the Netherlands.ORCID 0000-0002-8224-0993

Funding

Nederlandse Organisatie voor Wetenschappelijk Onderzoek P22.010Nederlandse Organisatie voor Wetenschappelijk Onderzoek Perspectief
6 · The paper itself

Abstract

To drastically reduce the carbon footprint of the food production chain, a major shift towards alternatives to conventional meat and dairy products is required. The use of plant-based proteins is a promising route, but it also comes with challenges: Plant-based proteins often contain antinutritional factors and off-flavors, which can negatively impact consumer acceptance. Fermentation is broadly used to improve the quality of these products. However, how these unwanted molecules are synthesized and degraded is poorly understood, but this knowledge is essential for fermentation-based strategies to improve the sensory and nutritional value of plant-based products. This review provides a comprehensive overview of synthesis and degradation pathways of key antinutritional factors and off-flavor compounds in plant-based substrates, including aldehydes, furans, sulfur compounds, pyrazines, glycoalkaloids (GAs), pyrimidine glycosides, polyphenols, saponins, glucosinolates (GSLs), phytic acid (PA), oxalates, lectins, and protease and amylase inhibitors. With this we identified the research gaps in the field, which can be divided into three types: (i) degradation pathways that are unknown (furans, alkyl-methoxypyrazines, and dimethyl trisulfide), (ii) well-characterized pathways but typically not found in food-grade organisms (dimethyl sulfide, dimethyl disulfide, and isothiocyanates derived from GSLs), and (iii) pathways that are only described partially (GAs, saponins, polyphenols, PA, and pyrimidine glycosides). Other molecule classes, like aldehydes, alcohols, and oxalate, have well-characterized degradation pathways in food-grade organisms. Focusing future research on compounds with poorly understood degradation pathways will help to accelerate the development of more rationally designed cultures for producing healthy and sustainable plant-based foods.

Indexed as

Flavoring AgentsPlantsFermentationMeat SubstitutesPlant ProteinsFlavoring AgentsPlant Proteinsantinutritional factorsbiocatalysisenzymesfermentationflavorlactic acid bacteriametabolismplant‐based foodyeast

Identifiers

PMID41918190
PMCPMC13039779

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.