Evidence map›Paper›PMID 41938813›Full record

ArticleBiodiversity data journal2026

A user-centric framework for harmonizing scientific name usage.

Walter G Berendsohn, Olaf Bánki, Markus Döring, David Fichtmueller, Anton Güntsch, Roger Hyam, Sofie Meeus, Andreas Müller, Bart Vanhoorne

Abstract read
In one paragraph

Article in Biodiversity data journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Walter G BerendsohnFreie Universität Berlin, Botanic Garden and Botanical Museum, Berlin, Germany Freie Universität Berlin, Botanic Garden and Botanical Museum Berlin Germany https://ror.org/046ak2485.ORCID https://orcid.org/0000-0001-9945-7606
Olaf BánkiCatalogue of Life, Amsterdam, Netherlands Catalogue of Life Amsterdam Netherlands.ORCID https://orcid.org/0000-0001-6197-9951
Markus DöringCatalogue of Life, Amsterdam, Netherlands Catalogue of Life Amsterdam Netherlands.ORCID https://orcid.org/0000-0001-7757-1889
David FichtmuellerFreie Universität Berlin, Botanic Garden and Botanical Museum, Berlin, Germany Freie Universität Berlin, Botanic Garden and Botanical Museum Berlin Germany https://ror.org/046ak2485.ORCID https://orcid.org/0000-0002-0829-5849
Anton GüntschFreie Universität Berlin, Botanic Garden and Botanical Museum, Berlin, Germany Freie Universität Berlin, Botanic Garden and Botanical Museum Berlin Germany https://ror.org/046ak2485.ORCID https://orcid.org/0000-0002-4325-4030
Roger HyamRoyal Botanic Garden Edinburgh, Edinburgh, United Kingdom Royal Botanic Garden Edinburgh Edinburgh United Kingdom https://ror.org/0349vqz63.ORCID https://orcid.org/0000-0003-4581-1379
Sofie MeeusMeise Botanic Garden, Meise, Belgium Meise Botanic Garden Meise Belgium https://ror.org/01h1jbk91.ORCID https://orcid.org/0000-0003-0715-8647
Andreas MüllerFreie Universität Berlin, Botanic Garden and Botanical Museum, Berlin, Germany Freie Universität Berlin, Botanic Garden and Botanical Museum Berlin Germany https://ror.org/046ak2485.ORCID https://orcid.org/0000-0003-1609-7882
Bart VanhoorneVLIZ, Oostende, Belgium VLIZ Oostende Belgium.ORCID https://orcid.org/0000-0002-6642-4725

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Biodiversity data linkage is a prerequisite for addressing pressing societal and research questions. Digitisation of resources has progressed rapidly, but this has led to a number of parallel approaches for datasets and services, making it difficult for users to identify the appropriate tool for their requirements. While scientific names are a key element for data linkage, they are not fully suited to this role. Many of them are not unique identifiers for taxa (such as the species that form the basic building block of a large part of biodiversity information) because taxonomic research has resulted in name changes. Likewise, usage is prone to errors like misspellings or misapplication of nomenclatural rules. This complexity and unreliability may demotivate data providers from readying their valuable datasets for integration into an interlinked landscape of biodiversity information. Correct linking of scientific names is an important element in this process of linking data from various sources. Aggregated taxonomic datasets and name-matching services are an essential infrastructure to build tools for this purpose and are increasingly using unique, resolvable and persistent name identifiers. Accessing the aggregated dataset via these identifiers can also display connections between the names within the dataset, linking, orthographic variants to correct spelling, synonyms to accepted taxon name etc. External datasets that hold valuable research and usage information as taxon-associated data can also be linked directly via these identifiers. This helps them to meet the FAIR data criteria (Findable, Accessible, Interoperable, Reusable). Name matching finds the aggregator's name identifier, adding this identifier to the local data record may help to further interconnect biodiversity information, if data providers are motivated to partake in this process of enabling data linkage. We posit that this motivation can be increased by simplifying the process of choosing the right method for their specific needs, which may vary widely. We thus propose a framework that helps users to select the optimal workflow to address these needs. This involves: (i) identifying and categorising the specific criteria that characterise different user needs; (ii) based on these criteria, defining the necessary metadata both for taxonomic datasets accessed by name-matching services and the name-matching services themselves; (iii) providing tools based on these metadata that will allow users to interactively and confidently choose the best-fit target dataset and name matching service for their specific purpose.

Indexed as

biodiversity researchdata linkagename matchingname-matching servicestaxonomic aggregatorstaxonomic databasestaxonomic datasetstaxonomy

Identifiers

PMID41938813
PMCPMC13049453

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.