Evidence map›Paper›PMID 41939533›Full record

ArticlePhysical review research

Optimizing information transmission in optogenetic Wnt signaling.

Olivier Witteveen, Samuel J Rosen, Ryan S Lach, Maxwell Z Wilson, Marianne Bauer

Abstract read
In one paragraph

Article in Physical review research. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Olivier WitteveenDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Technische Universiteit Delft, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.ORCID 0009-0004-3049-4344
Samuel J RosenInterdisciplinary Program in Quantitative Biosciences, University of California, Santa Barbara, California 93106, USA.ORCID 0000-0002-2981-7335
Ryan S LachIntegrated Biosciences, Inc., Redwood, California 94065, USA.
Maxwell Z WilsonDepartment of Molecular, Cellular, and Developmental Biology, University of California, Santa Barbara, California 93106, USA.ORCID 0000-0003-0768-7004
Marianne BauerDepartment of Bionanoscience, Kavli Institute of Nanoscience Delft, Technische Universiteit Delft, Van der Maasweg 9, 2629 HZ Delft, The Netherlands.ORCID 0000-0002-1191-986X

Funding

Optical dissection of human embryonic germ layer patterning mechanisms using microengineered stem cell modelsR01HD108803 · NICHD · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI Maxwell Zane Wilson · 2022 to 2026
$1.6M
Dissecting the structure-function relationship of the Wnt destruction complex condensateR21CA301306 · NCI · UNIVERSITY OF CALIFORNIA SANTA BARBARA · PI WILSON, MAXWELL ZANE · 2025 to 2025
$402k
NCI NIH HHS R21 CA301306NICHD NIH HHS R01 HD108803
6 · The paper itself

Abstract

Populations of cells regulate gene expression in response to external signals, but their ability to make reliable collective decisions is limited by both intrinsic noise in molecular signaling and variability between individual cells. In this work, we use optogenetic control of the canonical Wnt pathway as an example to study how reliably information about an external signal is transmitted to a population of cells, and determine an optimal encoding strategy to maximize information transmission from Wnt signals to gene expression. We find that it is possible to reach an information capacity beyond 1 bit only through an appropriate, discrete encoding of signals: using no Wnt, a short Wnt pulse, or a sustained Wnt signal. By averaging over an increasing number of outputs, we systematically vary the effective noise in the pathway. As the effective noise decreases, the optimal encoding comprises more discrete input signals. These signals do not need to be fine-tuned to achieve near-optimal information transmission. The optimal code transitions into a continuous code in the small-noise limit, which can be shown to be consistent with the Jeffreys prior. We visualize the performance of different signal encodings using decoding maps. Our results suggest that optogenetic Wnt signaling allows for regulatory control beyond a simple binary switch and provide a framework to apply ideas from information processing to single-cell

Identifiers

PMID41939533
PMCPMC13048778

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.