Evidence mapPaperPMID 41952002Full record

ArticleJournal of computer-aided molecular design2026

Computational framework to quantify synergistic ligand activity in insulin secretion and resistance pathways in type 2 diabetes.

Junyu Zhou, Xunbin Wei, Meiling Lui, Sunmin Park

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Article in Journal of computer-aided molecular design, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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5 · Who and what money

Authors and funding

4 authors.

Junyu ZhouInstitute of Advanced Clinical Medicine, Peking University, Beijing, 100191, China.
Xunbin WeiInstitute of Advanced Clinical Medicine, Peking University, Beijing, 100191, China.
Meiling LuiCollege of Chemical Engineering, Shanxi Institute of Science and Technology, Jincheng, 048011, China.
Sunmin ParkDepartment of Food and Nutrition, Obesity/Diabetes Research Center, Hoseo University, Asan, 31499, Korea. smpark@hoseo.edu.

Funding

the National Research Foundation of Korea RS-2023-00208567
6 · The paper itself

Abstract

Type 2 diabetes mellitus (T2DM) involves dysregulation of both insulin secretion and insulin resistance pathways. However, current therapies often target only one pathway, leading to limited effectiveness. We aimed to develop a computational framework to quantify synergistic ligand activity across both pathways, providing a foundation for multi-target therapeutic strategies. We built a synergy assessment framework targeting six key proteins: glucagon-like peptide-1 receptor (GLP1R) and kinesin family member 11 (KIF11) in the insulin secretion pathway; and insulin-like growth factor 1 receptor (IGF1R), insulin receptor (INSR), peroxisome proliferator-activated receptor gamma (PPARG), and fibroblast growth factor receptor 1 (FGFR1) in the insulin resistance pathway. Ligand data were compiled from ChEMBL, PubChem, and ZINC databases, with bioactivity standardized as pIC50 values. Pathway activities were quantified as Secretion Pathway Activity (Asec) and Resistance Pathway Activity (Ares). Synergistic effects were evaluated using expected effect (Eexp), synergy factor (SF = 0.5 × Asec × Ares), actual effect (Eact = min (1.0, Eexp + SF)), and net synergy value (Δsyn = Eact − Eexp). Molecular docking validation showed high-synergy compounds exhibited favorable binding energies (< − 7 kcal/mol), with docking scores correlating strongly with experimental pIC50 values (r > 0.7). Notably, CID_45271263 demonstrated potent binding affinity (< − 10 kcal/mol) for both GLP1R and KIF11. Network analysis identified INSR as a critical hub connecting both pathways. High-synergy ligands preferentially engaged both pathways simultaneously, with significant inter-pathway correlations observed between GLP1R-PPARG (r = 0.86) and KIF11-FGFR1 (r = 0.93). Three-dimensional modeling revealed non-linear synergistic surfaces with distinct high-efficacy zones (Δsyn > 0.12). In conclusion, this validated computational framework enables the systematic identification and design of multi-target drugs with enhanced synergistic effects, thereby improving the therapeutic efficacy of T2DM.

Indexed as

Diabetes Mellitus, Type 2Hypoglycemic AgentsInsulinInsulin ResistanceInsulin SecretionAntigens, CDGlucagon-Like Peptide-1 ReceptorHumansKinesinsLigandsMolecular Docking SimulationPPAR gammaReceptor, Fibroblast Growth Factor, Type 1Receptor, IGF Type 1Receptor, InsulinAntigens, CDGlucagon-Like Peptide-1 ReceptorHypoglycemic AgentsINSR protein, humanInsulinKIF11 protein, humanKinesinsLigandsPPAR gammaReceptor, Fibroblast Growth Factor, Type 1Receptor, IGF Type 1Receptor, InsulinComputational frameworkInsulin resistanceInsulin secretionMulti-target drug designSynergyType 2 diabetes mellitus

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.