Evidence map›Paper›PMID 41964436›Full record

ArticleProtein science : a publication of the Protein Society2026

The subunit composition of the mammalian Mediator complex is not conserved in all vertebrates: Insights from evolutionary plasticity of fish genomes.

Radka Symonová, Thomas J Near, Jan Kubečka

Abstract read
In one paragraph

Article in Protein science : a publication of the Protein Society, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

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5 · Who and what money

Authors and funding

3 authors.

Radka SymonováFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.
Thomas J NearDepartment of Ecology and Evolutionary Biology, Osborn Memorial Labs, Yale University, New Haven, Connecticut, USA.ORCID https://orcid.org/0000-0002-7398-6670
Jan KubečkaFaculty of Science, University of South Bohemia, České Budějovice, Czech Republic.ORCID https://orcid.org/0000-0001-9203-4854

Funding

ELIXIR CZ Research Infrastructure IDLM2018131Regional cooperation programme of Czech Academy of Sciences R200962402
6 · The paper itself

Abstract

The Mediator complex is an indispensable, multi-subunit protein transcriptional coactivator with a central role in gene expression in Eukaryotes. Among vertebrates, its molecular structure and subunit composition are well-known only for mammals. Genes encoding fish Mediator subunits remain unknown even for zebrafish that is otherwise the best explored fish species. Here, we first reconstructed genes encoding Mediator subunits from 12 brain transcriptomes of a percid fish, pikeperch (Sander lucioperca). These data revealed two additional fish-specific paralogous genes (med13b and med31l) and a missing paralog (med12l) in comparison to genes of mammalian Mediator subunits. The Med13 subunit is encoded by two paralogs in basal (coelacanth) as well as derived sarcopterygians (mammals), while three paralogs are present in numerous but not all fish lineages. All three med13 paralogs were highly transcribed in the juvenile pikeperch brain. Our molecular-phylogenetic analysis of the three fish med13 paralogs revealed the evolutionary origin of the additional med13b paralog from the teleost-specific genome duplication. The additional paralog med31l encoding the Med31 subunit shows a more limited occurrence among fishes with potentially different ways and times of its origin-tandem duplication on the same chromosome, translocation in the opposite strand of another chromosome or a consequence of whole-genome duplication. The mammalian Mediator complex is not universal to all vertebrates and paralogs encoding subunits of the Mediator complex are not conserved across all vertebrates. Further research is needed to explore fish-specific genes encoding subunits of the Mediator complex and their tissue-specific transcription.

Indexed as

Evolution, MolecularFishesFish ProteinsGenomeMediator ComplexPerciformesAmino Acid SequenceAnimalsBrainGene DuplicationMammalsPhylogenyProtein SubunitsFish ProteinsMediator ComplexProtein Subunitsfish‐specific Mediator paralogsmed13bmed31lteleost genome duplication

Identifiers

PMID41964436
PMCPMC13069492

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.