Evidence map›Paper›PMID 41964867›Full record

ReviewCurrent oncology reports2026

Harnessing Proteogenomics to Advance Precision Oncology: From Melanoma and Hepatocellular Carcinoma Perspective.

Abolaji Samson Olagunju, Ayoade Desmond Babalola, Sarah Eseroghene Najophe, Oluwabukola Mary Farodoye, Titilayomi Ayomide Otenaike, Umin-Awaji Sunday Godswill, John Oluwafemi Teibo

Abstract readReview
In one paragraph

Review in Current oncology reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Abolaji Samson OlagunjuInstitute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Ayoade Desmond BabalolaGraduate Program in Genetics and Molecular Biology, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.
Sarah Eseroghene NajopheInstitute of Biomedical Sciences, University of São Paulo, São Paulo, Brazil.
Oluwabukola Mary FarodoyeGraduate Program in Genetics and Molecular Biology, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.
Titilayomi Ayomide OtenaikeGraduate Program in Genetics and Molecular Biology, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre, RS, Brazil.
Umin-Awaji Sunday GodswillGraduate Program in Biochemistry, Federal University of Rio Grande do Sul (UFRGS), Porto Alegre-RS, Brazil.
John Oluwafemi TeiboDepartment of Biochemistry and Immunology, Ribeirão Preto Medical School, University of São Paulo, Ribeirão Preto-São Paulo, Brazil. johnteibo@usp.br.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

purpose of reviewGenomic profiling has significantly advanced precision oncology; however, relying solely on genome-driven approaches is often insufficient to capture the full molecular complexity of cancer. Proteogenomics integrates proteomics, transcriptomics, and genomic analyses to provide a more holistic view of tumor biology by revealing how genetic alterations translate into functional consequences at the protein level. RECENT

findingsThis multidimensional framework enhances the ability to identify clinically actionable biomarkers, uncover dysregulated pathways, and understand tumor heterogeneity with greater precision. By advancing tumor molecular profiling, proteogenomics offers the potential to refine tumor classification, improve diagnostic accuracy, and better tailor therapeutic strategies to individual patient needs. This review examines the expanding role of proteogenomics as an essential tool in personalized cancer management. Key analytical platforms, including mass spectrometry–based proteomics and phosphoproteomics, next-generation sequencing, and integrative computational pipelines, are discussed. We also highlight illustrative applications across diverse malignancies, including melanoma and hepatocarcinoma (HCC), where proteogenomic insights have informed therapeutic decision-making, revealed novel drug targets, and improved understanding of treatment resistance mechanisms; challenges and future prospects were also discussed. These advancements collectively highlight the increasing significance of proteogenomics in the evolution of precision oncology and the centrality of integrated molecular profiling in personalized cancer treatment.

Indexed as

Carcinoma, HepatocellularLiver NeoplasmsMelanomaPrecision MedicineProteogenomicsBiomarkers, TumorHumansMultiomicsProteomicsBiomarkers, TumorCancer managementMolecular profilingMulti-omicsPersonalized therapyPrecision oncologyProteogenomics

Identifiers

PMID41964867
PMCPMC13070082

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.