Evidence map›Paper›PMID 42016930›Full record

ReviewBiochemistry and biophysics reports2026

Epigenetic regulation by gut microbiota-derived metabolites in celiac disease.

Marzieh Khaneshi, Fatemeh Alizadeh, Armin Ghahremanzadeh, Roghayeh Faraji Akhijahani, Baharak Maddahi, Amirhossein Faghih Ojaroodi, Shahram Abdoli Oskouei, Masoud Lahouty

Abstract readReview
In one paragraph

Review in Biochemistry and biophysics reports, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors.

Marzieh KhaneshiPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Fatemeh AlizadehPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Armin GhahremanzadehPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Roghayeh Faraji AkhijahaniPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Baharak MaddahiPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Amirhossein Faghih OjaroodiStudent Research Committee, Tabriz University of Medical Sciences, Tabriz, Iran.
Shahram Abdoli OskoueiPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.
Masoud LahoutyPediatric Health Research Center, Tabriz University of Medical Sciences, Tabriz, Iran.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Celiac disease (CeD) is a chronic autoimmune disorder triggered by gluten in genetically susceptible individuals carrying HLA-DQ2/DQ8 haplotypes. Although genetic predisposition and gluten exposure are necessary, they are insufficient in the development of the disease, pointing to critical roles for environmental factors-particularly gut microbiota dysbiosis and its metabolites-in disrupting immune tolerance through epigenetic mechanisms. This review collects current evidence on the microbiota-metabolite-epigenetic axis in CeD pathogenesis. Dysbiosis is characterized by reduced microbial diversity, depletion of protective taxa (e.g., Bacteroidetes), and enrichment of pro-inflammatory groups. Bacterial metabolites exert opposing effects: short-chain fatty acids (SCFAs), especially butyrate, act protectively by inhibiting histone deacetylases, promoting histone acetylation, stabilizing anti-inflammatory FOXP3 isoforms in regulatory T cells, and modulating alternative splicing and miRNA networks to reinforce barrier integrity and immune tolerance. Conversely, certain metabolites and microbial signals can drive pathogenic epigenetic changes, including altered DNA methylation, histone modifications, and miRNA dysregulation that amplify NF-κB, IL-17, and IFN-γ pathways. Emerging data from organoid models and multi-omics studies further highlight the therapeutic potential of microbial-derived postbiotics and cell-free supernatants (e.g., from

Indexed as

ButyrateCeliac diseaseEpigenetic modificationsGlutenInflammationSCFA

Identifiers

PMID42016930
PMCPMC13092766

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.