Evidence map›Paper›PMID 42086006›Full record

Observational studyInternational dental journal2026

Association of OPG, TNF-α, and IL-1B Gene Variants With Periodontitis in a South African Population.

Salma Kabbashi, Ndonwi Elvis Ngwa, Haly Holmes, Yvonne Prince, Manogari Chetty

Abstract readObservational Study
In one paragraph

Observational study in International dental journal, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors.

Salma KabbashiDepartment of Craniofacial Biology, Pathology, & Radiology, Faculty of Dentistry, University of the Western Cape, Cape Town, South Africa. Electronic address: skabbashi@uwc.ac.za.
Ndonwi Elvis NgwaSAMRC/CPUT/Cardiometabolic Health Research Unit, Department of Biomedical Sciences, Faculty of Health & Wellness Sciences, Cape Peninsula University of Technology, Cape Town, South Africa.
Haly HolmesDepartment of Oral Medicine & Periodontology, Faculty of Dentistry, University of the Western Cape, Cape Town, South Africa.
Yvonne PrinceSAMRC/CPUT/Cardiometabolic Health Research Unit, Department of Biomedical Sciences, Faculty of Health & Wellness Sciences, Cape Peninsula University of Technology, Cape Town, South Africa.
Manogari ChettyDepartment of Craniofacial Biology, Pathology, & Radiology, Faculty of Dentistry, University of the Western Cape, Cape Town, South Africa.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

aimThis study aimed to investigate candidate single-nucleotide polymorphisms linked to periodontitis susceptibility in a Western Cape cohort, providing insights into population-specific host genetic factors. MATERIALS AND

methodsThis observational case-control study recruited a total of 150 South African participants. Saliva samples were genotyped using the OpenArray QuantStudio 12K Flex qPCR System. Genotype and allele frequencies were assessed for Hardy-Weinberg equilibrium and tested for associations with clinical variables and disease status using Chi-square tests and logistic regression adjusted for age, gender, and smoking.

resultsA total of 24 SNPs were analysed. Several genotypes showed suggestive associations with periodontitis risk prior to multiple testing correction. The OPG + 1181 CG, RANKL RL2 AG, and IL-17A + 197 GG genotypes were linked to higher plaque score. The TNF-α -238 GG genotype was associated with lower bleeding score and reduced disease risk (OR = 0.157, 95% CI: 0.039-0.638, P = .010), while IL-1B -511 GG genotype corresponded with a reduced disease risk (adjusted OR = 0.216, 95% CI: 0.054-0.867, P = .031). Conversely, OPG + 1181 CC was related to increased disease risk under multiple models (adjusted OR = 20.42, 95% CI: 1.95-213.9, P = .012). These associations lost significance after correction for multiple testing. Ethnicity-based subgroup analysis revealed differences in genotype distribution, while smoking status showed no effect.

conclusionGenetic variants may influence periodontitis susceptibility, underscoring the importance of population-specific risk profiling and the need for replication in larger cohorts to support targeted diagnostics in resource-limited settings.

Indexed as

Interleukin-1betaOsteoprotegerinPeriodontitisPolymorphism, Single NucleotideTumor Necrosis Factor-alphaAdultCase-Control StudiesFemaleGene FrequencyGenetic Predisposition to DiseaseGenotypeHumansMaleMiddle AgedSouth AfricaInterleukin-1betaOsteoprotegerinTNFRSF11B protein, humanTumor Necrosis Factor-alphaInterleukin-1betaOsteoprotegerinPeriodontitisPolymorphismSouth AfricaTumour Necrosis Factor-alpha

Identifiers

PMID42086006
PMCPMC13158762

What Socratic holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.