Evidence map›Paper›PMID 42100368›Full record

ArticleImmunoinformatics (Amsterdam, Netherlands)2025

Machine learning in AIRR diagnostics: Advances and applications.

Aslı Semerci, Celine AlBalaa, Brian Corrie, Dylan Duchen, Gisela Gabernet, Jinwoo Leem, Enkelejda Miho, Ulrik Stervbo, Justin Barton, Pieter Meysman and 1 more

Abstract read
In one paragraph

Article in Immunoinformatics (Amsterdam, Netherlands), 2025. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Aslı SemerciUNAM - National Nanotechnology Research Center, Bilkent University, Ankara, 06800, Turkey.ORCID 0000-0003-2174-8897
Celine AlBalaaImmunology-Immunopathology-Immunotherapy (i3), INSERM UMRS-959, Sorbonne Université, Paris, France.
Brian CorrieDepartment of Biological Sciences, Simon Fraser University, Burnaby, Canada.
Dylan DuchenDepartment of Pathology, Yale School of Medicine, New Haven, CT, 06511, USA.
Gisela GabernetDepartment of Pathology, Yale School of Medicine, New Haven, CT, 06511, USA.
Jinwoo LeemAlchemab Therapeutics Ltd, 1 Lion Works, Station Road East, Whittlesford, CB22 4WL, United Kingdom.
Enkelejda MihoInstitute of Medical Engineering and Medical Informatics, School of Life Sciences, University of Applied Sciences and Arts Northwestern Switzerland, Muttenz, Switzerland.
Ulrik StervboCenter for Translational Medicine and Immune Diagnostics Laboratory, Medical Department I, Marien Hospital Herne, University Hospital of the Ruhr-University Bochum, Herne, Germany.
Justin BartonInstitute of Structural and Molecular Biology, London, UK.
Pieter MeysmanAdrem Data Lab, University of Antwerp, Belgium.
AIRR-Community

Funding

MEDICAL INFORMATICS RESEARCH TRAINING AT YALET15LM007056 · NLM · YALE UNIVERSITY · PI Mark Bender Gerstein, LUCILA OHNO-MACHADO · 1987 to 2026
$22.2M
i-AKC: Integrated AIRR Knowledge CommonsU24AI177622 · NIAID · UT SOUTHWESTERN MEDICAL CENTER · PI LINDSAY G. COWELL · 2023 to 2026
$4.0M
Large-scale integrated data analysis of lymphocyte receptor repertoires with workflowsU01AI184647 · NIAID · YALE UNIVERSITY · PI GABERNET, GISELA · 2024 to 2025
$1.5M
NIAID NIH HHS U01 AI184647NIAID NIH HHS U24 AI177622NLM NIH HHS T15 LM007056
6 · The paper itself

Abstract

Recent advancements in sequencing technologies have led to an exponential increase in adaptive immune receptor repertoire (AIRR) data. These receptors, crucial to the adaptive immune system, are believed to have strong potential for diagnostic applications. The immune repertoires represent a wealth of data, creating a growing demand for robust computational methods to analyze and interpret this vast amount of information. In this review, we examine the application of machine learning algorithms for the classification and analysis of AIRR-seq data for different diagnostic applications. We provide a high-level division of current approaches based on their focus on repertoire-level or sequence-level features. We provide an overview of the current state of public AIRR data sets available for model training. Finally, we briefly highlight what lessons can be learned from successful AIRR diagnostic approaches and what hurdles still must be overcome.

Indexed as

Adaptive immune receptor repertoire (AIRR)DiagnosticMachine learning

Identifiers

PMID42100368
PMCPMC13148369

What Socratic holds

Textmetadata
LicenceCC BY-NC
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.