Evidence map›Paper›PMID 42139162›Full record

ReviewBriefings in bioinformatics2026

Estimating tumour immune infiltration: methodological convergence across histology and spatial technologies.

Beilei Bian, Yue Cao, Jean Yee Hwa Yang

Abstract readReview
In one paragraph

Review in Briefings in bioinformatics, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors.

Beilei BianSchool of Mathematics and Statistics, The University of Sydney, F07 Eastern Avenue, Sydney, Australia.ORCID 0000-0002-4849-1094
Yue CaoSchool of Mathematics and Statistics, The University of Sydney, F07 Eastern Avenue, Sydney, Australia.ORCID 0000-0002-2356-4031
Jean Yee Hwa YangSchool of Mathematics and Statistics, The University of Sydney, F07 Eastern Avenue, Sydney, Australia.ORCID 0000-0002-5271-2603

Funding

National Health and Medical Research Council
6 · The paper itself

Abstract

Estimating tumour immune infiltration is critical for understanding cancer biology and predicting patient response to surgery and immunotherapy. A wide array of experimental platforms supports various computational approaches for quantifying tumour-infiltrating lymphocytes and immune infiltration level within the tumour microenvironment, including traditional histopathology, immunohistochemistry, AI-based digital pathology, bulk RNA sequencing, and spatial omics now. Although numerous technologies are available to quantify immune infiltration, important questions remain about which approaches are most suitable and how best to guide platform and methodological choices. In this review, we provide a comprehensive overview of how each platform estimates tumour immune profile coupled with their corresponding computational approaches, followed by a comparative discussion on technological resolution, cell-type specificity, spatial context, and clinical interpretability. We also discuss emerging trends in multimodal data integration, including mapping-based and fusion-based strategies. Together, our review underscores both the methodological opportunities and the translational potential of diverse immune infiltration estimation strategies, guiding the design of more actionable immune profiling strategies.

Indexed as

Lymphocytes, Tumor-InfiltratingNeoplasmsTumor MicroenvironmentComputational BiologyHumansImmunoinformaticscomputational methodshistologymultimodal data integrationspatial omicstumour immune infiltration

Identifiers

PMID42139162
PMCPMC13178461

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.