Evidence map›Paper›PMID 42189983›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2026

Uncovering ParB-dependent and -independent subclasses of T-dioxygenases from bacteriophage.

Katherine H O'Toole, Lydia J Perkins, Auriane Bouchet, Mia L DeSanctis, Sean R Lund, Andrew J Mulholland, Yahya El Hariri, Sabaa Belkadi, Harold W Bell, David M Hough and 1 more

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors.

Katherine H O'TooleResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0000-0001-6180-7607
Lydia J PerkinsResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0000-0002-5895-8540
Auriane BouchetResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0009-0006-9701-8937
Mia L DeSanctisResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0009-0003-7395-4745
Sean R LundResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0000-0003-1656-7979
Andrew J MulhollandResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.
Yahya El HaririResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.
Sabaa BelkadiResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.
Harold W BellResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0009-0009-7521-6504
David M HoughResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.
Lana SalehResearch Department, Biochemistry and Microbiology Division, New England Biolabs, Ipswich, MA 01938.ORCID 0000-0003-2629-9795

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

5-Methylpyrimidine dioxygenases (5mYOXs) are iron (II)/2-oxoglutarate-dependent enzymes that catalyze the postreplicative oxidation of DNA 5-methylpyrimidines. Here, we define two subclasses of phage thymine (T) 5mYOXs: a stand-alone enzyme and a second requiring an activator. Using bioinformatic tools, we show that the activator is homologous to the bacterial chromosomal segregation (CS) protein ParB, retaining the N

Indexed as

BacteriophagesDioxygenasesThymineViral ProteinsProtein DomainsDioxygenasesThymineViral Proteins5-methylpyrimidine dioxygenaseactivatorJBPParBthymine dioxygenase

Identifiers

PMID42189983
PMCPMC13229309

What Socratic holds

Textmetadata
LicenceCC BY-NC-ND
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.