Evidence map›Paper›PMID 42194333›Full record

ReviewBioengineering (Basel, Switzerland)2026

Pathology Foundation Models: Evolution, Current Landscape, Challenges and Opportunities from a Technical and Clinical Perspective.

Hussien Al-Asi, Ibrahim Yilmaz, Jordan Reynolds, Shweta Agarwal, Aziza Nassar, Abba Zubair, Craig Horbinski, Bryan Dangott, Zeynettin Akkus

Abstract readReview
In one paragraph

Review in Bioengineering (Basel, Switzerland), 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Hussien Al-AsiDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.ORCID 0009-0003-5681-0600
Ibrahim YilmazDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.
Jordan ReynoldsDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.ORCID 0000-0001-7455-6122
Shweta AgarwalDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.
Aziza NassarDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.ORCID 0000-0002-6678-9329
Abba ZubairDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.ORCID 0000-0003-4827-4740
Craig HorbinskiDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.
Bryan DangottDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.
Zeynettin AkkusDepartment of Laboratory Medicine and Pathology, Mayo Clinic Florida, 4500 San Pablo Rd S, Jacksonville, FL 32224, USA.ORCID 0000-0003-3920-1515

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Foundation models are reshaping computational pathology by enabling scalable task-agnostic representations of histopathological whole-slide images (WSIs). Unlike earlier task-specific deep learning systems, pathology foundation models (PFMs) leverage massive whole-slide image repositories and self-supervised Vision Transformer architectures to achieve broad generalization and few-shot adaptability. Their evolution reflects a shift from weakly supervised approaches such as Clustering-Constrained Attention Multiple Instance Learning (CLAM) and hierarchical architectures such as Hierarchical Image Pyramid Transformer (HIPT) to large-scale efforts including foundation models, UNI, Virchow, Phikon, CONtrastive learning from Captions for Histopathology (CONCH), GigaPath, H-Optimus, Transformer-Based Pathology Image and Text Alignment Network (TITAN), and the Mayo Clinic Atlas. These models demonstrate impressive performance across diagnostic and prognostic benchmarks while also opening pathways for multimodal integration with genomics and clinical data. Yet significant barriers remain including inconsistent generalization across institutions, interpretability lagging behind clinical needs, and slow integration into routine laboratory workflows. Certain domains of anatomic pathology such as cytopathology, transplant pathology, frozen sections, and rare tumor subtypes remain particularly resistant to current models. Here, we review the development of PFMs, critically evaluate their strengths and limitations, and outline priorities for their safe and effective clinical translation. We argue that the next phase of PFM development will depend on rigorous benchmarking, pathologist-in-the-loop deployment, and multimodal fusion ensuring these models evolve from research tools into clinically robust systems.

Indexed as

artificial intelligencedeep learningpathology foundation modelsvision encodersvision transformers

Identifiers

PMID42194333
PMCPMC13203929

What Socratic holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.