Evidence map›Paper›PMID 42210497›Full record

ArticleThe New phytologist2026

OsMYB94 functions as a master regulator of metabolic pathways associated with rice caryopsis maturation and quality formation.

Yaman Shi, Xian Li, Weiyi Lin, Lei Shi, Huangwei Chu, Haiyan Liu, Jianxin Shi

Abstract read
In one paragraph

Article in The New phytologist, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

0numbers the graph read from it
0cells of the map it votes in
0citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

0 citing papers in PubMed.

No citing paper in PubMed yet.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors.

Yaman ShiDepartment of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Xian LiDepartment of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Weiyi LinDepartment of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Lei ShiDepartment of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.
Huangwei ChuKey Laboratory of Germplasm Innovation and Genetic Improvement of Grain and Oil Crops, Ministry of Agriculture and Rural Affairs, Crop Breeding and Cultivation Research Institute, Shanghai Academy of Agricultural Sciences, Shanghai, 201403, China.ORCID https://orcid.org/0000-0001-8846-2506
Haiyan LiuInstitute for Agri-food Standards and Testing Technology, Shanghai Academy of Agricultural Sciences, 1000 Jinqi Road, Shanghai, 201403, China.
Jianxin ShiDepartment of Genetics and Developmental Science, Joint International Research Laboratory of Metabolic and Developmental Sciences, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai, 200240, China.ORCID https://orcid.org/0000-0002-7717-0863

Funding

Innovative Research Team, Ministry of Education B14016National Natural Science Foundation of China 31971907National Natural Science Foundation of China 32370348Shanghai Agricultural Science and Technology Innovation Program K2023002
6 · The paper itself

Abstract

Rice (Oryza sativa) caryopses supply essential carbohydrates, energy, and protein to over half the world's population. Caryopsis quality depends on the biosynthesis, modification, and accumulation of primary and secondary metabolites during maturation. Yet, the regulatory and biochemical pathways remain poorly understood. Emerging evidence implicates transcription factors, particularly MYB family members, in this regulation. In this study, the function of R2R3 MYB transcription factor OsMYB94 in regulating metabolic pathways underlying rice caryopsis maturation and quality formation was characterized using integrative approaches. OsMYB94 orchestrates secondary metabolism (for protection), reserve accumulation (for energy storage), reactive oxygen species homeostasis (for antioxidant defense), and hormonal signaling (for desiccation and dormancy) to ensure proper maturation and high-quality formation of rice caryopses. osmyb94 caryopses exhibit poor appearance quality, milling quality, and eating and cooking quality, correlating with incomplete caryopsis filling, thinner aleurone and coat layers, reduced starch and triglyceride accumulation, disrupted lipid metabolism, and downregulation of genes associated with ripening-related metabolic pathways. Furthermore, the OsMYB94-OsLTPL12 module is a key regulator of rice caryopsis glossiness. This study highlights that OsMYB94 is a master regulator of metabolic pathways associated with rice caryopsis maturation and quality formation, offering a genetic target for improvement.

Indexed as

Metabolic Networks and PathwaysOryzaPlant ProteinsSeedsTranscription FactorsGene Expression Regulation, PlantLipid MetabolismPlant Growth RegulatorsReactive Oxygen SpeciesStarchTriglyceridesaleuronePlant Growth RegulatorsPlant ProteinsReactive Oxygen SpeciesStarchTranscription FactorsTriglyceridesaleuronecaryopsis coatcaryopsis qualitymedium‐ and long‐chain fatty acidwax

Identifiers

PMID42210497
PMCPMC13373856

What Socratic holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.