Evidence mapPaperPMID 42211301Full record

ArticleFrontiers in neurology2026

Integrating multi-omics and machine learning to explore the role of amino acid metabolism in intervertebral disk degeneration.

Xusheng Li, Ahmad Nazrun Shuid, Mohd Fairudz Mohd Miswan, Xiao Zhang, Wenbo Gu, Donghui Cao, Jungang Wang, Ziyang Jiang, Haifeng Yuan

Abstract read
In one paragraph

Article in Frontiers in neurology, 2026. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Not yet cited in PubMed.

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1 · What the graph read from it

What it found

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The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

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Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

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4 · The record

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PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Xusheng Li *Department of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Ahmad Nazrun Shuid *Faculty of Medicine, Universiti Teknologi MARA, Sungai Buloh Campus, Jalan Hospital, Sungai Buloh, Selangor, Malaysia.
Mohd Fairudz Mohd MiswanFaculty of Medicine, Universiti Teknologi MARA, Sungai Buloh Campus, Jalan Hospital, Sungai Buloh, Selangor, Malaysia.
Xiao ZhangDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Wenbo GuDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Donghui CaoDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Jungang WangDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Ziyang JiangDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.
Haifeng YuanDepartment of Spinal Orthopaedics, General Hospital of Ningxia Medical University, Yinchuan, China.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Objective: Intervertebral disk degeneration (IDD) is the leading cause of chronic low back pain, yet its link to amino acid metabolic reprogramming remains unclear. Methods: Three GEO transcriptomes were integrated; amino-acid-metabolism genes were intersected with differentially expressed genes. Core genes were selected by LASSO, SVM and random forest, incorporated into an SHAP-interpretable nomogram, and tested by single-cell analysis, Results: Forty-three altered amino acid metabolism-related genes were identified, from which five core genes were screened: CETP, AIFM1, and GM2A were up-regulated; PNPLA2 and AGK were down-regulated. The constructed nomogram prediction model achieved an AUC value of 0.812. Degenerated intervertebral disks exhibited increased immune infiltration; the core genes either suppressed protective matrix genes or impaired stress defense capability. Molecular docking results showed that NVP-AEW541 and EGCG could bind to the AIFM1 protein with a binding free energy of -10.7 kcal/mol; WB confirmed protein trends. Conclusion: The five-core-gene signature is strongly associated with IDD and may represent a key regulatory pathway, offering a promising diagnostic model and potential therapeutic targets.

Indexed as

amino acid metabolismbiomarkersin silico knockoutintervertebral disk degenerationmachine learning

Identifiers

PMID42211301
PMCPMC13212091

What Socratic holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the Socratic graph.